Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30165
         (660 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                      194   7e-50
SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)               31   1.1  
SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6)                       29   2.5  
SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   5.9  
SB_39772| Best HMM Match : BAR (HMM E-Value=1.7)                       28   7.7  
SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score =  194 bits (472), Expect = 7e-50
 Identities = 85/130 (65%), Positives = 101/130 (77%)
 Frame = +2

Query: 269 YKLHKLDQGPATSATLTSEDALKLYEQLTILRRIETASGNLYKEKIIRGFCHLYSGQEAV 448
           Y LHK+  GP   A +T E+ L  Y Q+ I+RR+ETA+ NLYK K+IRGFCHLYSGQEA 
Sbjct: 2   YTLHKITDGPPGKAVMTREEGLTYYRQMQIVRRMETAASNLYKSKVIRGFCHLYSGQEAC 61

Query: 449 AVGMRAAMRDADSVITAYRCHGWTYLMGVSVLGVLSELTGRRTGCSRGKGGSMHLYGRNF 628
            VGM A++   DSVITAYRCHGWTY+ G S   VL ELTGR+TGC++GKGGSMH+YG  +
Sbjct: 62  CVGMEASIDKNDSVITAYRCHGWTYMRGRSAREVLCELTGRKTGCTQGKGGSMHMYGHEY 121

Query: 629 YGGNGIVGAQ 658
           YGGNGIVGAQ
Sbjct: 122 YGGNGIVGAQ 131


>SB_16422| Best HMM Match : HMG_box (HMM E-Value=8.7e-26)
          Length = 245

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 651 PTIPLPP*KLRPYKCMEPPLPREQPVLRPVSSESTPSTLTP 529
           PT  LP     PY  +E P+P  +P+ R  ++ ++ S+ +P
Sbjct: 125 PTYALPSESRLPYPHLETPVPMAEPLTREEATATSTSSTSP 165


>SB_1478| Best HMM Match : GAGE (HMM E-Value=1.6)
          Length = 437

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 515 WTYLMGVSVLGVLSELTGRRTGCSRGKG-GSMHLYG 619
           W+YL  V+ L    EL  RR+GC   +G  S+H  G
Sbjct: 242 WSYLPAVAELPATPELHDRRSGCWNKRGRSSVHQSG 277


>SB_17224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 935

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +2

Query: 401 KIIRGFCHLYSGQEAVAVGMRAAMRDADSVITAYRCHGWTYLM 529
           +++  + H Y+  E VA G+R  + + D+ +  +R + + Y+M
Sbjct: 503 RLLSAYTHAYTYAEGVADGIR--LLETDTCVATHRVYAYVYVM 543


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +2

Query: 161  AAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKL 340
            A+  LA  T+++V   VV  N   +   E TF+        LD   AT A     + LK 
Sbjct: 2125 ASPTLAETTVSEVD--VVLHNKAQALSTEETFDFSSGDNTNLDASGATEAQFQKTNPLKR 2182

Query: 341  YEQLTILR 364
             + +T+L+
Sbjct: 2183 LDPVTVLQ 2190


>SB_39772| Best HMM Match : BAR (HMM E-Value=1.7)
          Length = 210

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +2

Query: 554 SELTGRRTGCSRGKGGSMHLYGRNFYGGNGIVG 652
           +E+ G+R     G  G   ++G+  YGG+G +G
Sbjct: 131 AEIWGKRKYWGSGNMGEAEIWGKRKYGGSGNMG 163


>SB_23095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2722

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 598 RFHAFVRTQLLRWQRDCWCAG 660
           R+H    T + +WQ DC C G
Sbjct: 226 RYHDMGITHMFQWQADCLCTG 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,440,781
Number of Sequences: 59808
Number of extensions: 409543
Number of successful extensions: 1322
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)