Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30161
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    62   4e-11
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    28   0.81 
SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    25   4.3  
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo...    25   5.7  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   7.5  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    25   7.5  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    25   7.5  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    24   9.9  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 62.1 bits (144), Expect = 4e-11
 Identities = 31/61 (50%), Positives = 40/61 (65%)
 Frame = +1

Query: 277 HKLDQGPATSATLTSEDALKLYEXLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 456
           +K+D  P+T   +T  + L LYE +  +RR+E A   LYK K IRGFCHL  GQEAVA G
Sbjct: 62  YKIDV-PSTEIEVTKGELLGLYEKMVTIRRLELACDALYKAKKIRGFCHLSIGQEAVAAG 120

Query: 457 M 459
           +
Sbjct: 121 I 121


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 27.9 bits (59), Expect = 0.81
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 413 PRMIFSLYRFPDAVSILRNIVSXSYSLRA 327
           PR++F +   PDAV IL+N++  +   +A
Sbjct: 332 PRIVFHIQITPDAVEILKNVLRRTVERQA 360


>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 247 ATFEIKPYKLHKLDQGPATSATLTSEDA 330
           A F++ P+K+  LD   + S  LT +DA
Sbjct: 41  APFDVPPFKVESLDVLISQSEQLTKQDA 68


>SPAC821.05 |||translation initiation factor
           eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 357

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 274 LHKLDQGPATSATLTSEDALKLYE---XLT-ILRRIETASGNLYKEKI 405
           LH L + P  ++TLT+E AL+  E    LT      E + G  Y++ I
Sbjct: 204 LHSLSEPPTPASTLTAEAALEDCESNLPLTETFSNFEVSLGTRYRKNI 251


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 247 ATFEIKPYKLHKLDQGPATSATLTSEDALKLYE 345
           A F+IKP  L    Q P  +  L  E ++ LY+
Sbjct: 343 AAFDIKPSTLDTQTQLPENTYVLKEETSMVLYD 375


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +2

Query: 215 RQTQNTARKKRRHSKSSPTNS 277
           ++T+N+AR+  RHS+S+ + S
Sbjct: 680 QRTENSARESLRHSRSNMSRS 700


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 175 AGNTITKVTAPVVATNAKYSTKKEATFEIKP 267
           AG  +T V+A  + T AKY+ +    F +KP
Sbjct: 367 AGYYLTFVSAAFIQTVAKYTRRHVRPFFLKP 397


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 239 KKRRHSKSSPTNS 277
           KKR+HSK  P NS
Sbjct: 30  KKRKHSKEKPQNS 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,704
Number of Sequences: 5004
Number of extensions: 31919
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)