Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30161
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)                       89   1e-18
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)                  28   3.3  

>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
          Length = 352

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 39/66 (59%), Positives = 47/66 (71%)
 Frame = +1

Query: 268 YKLHKLDQGPATSATLTSEDALKLYEXLTILRRIETASGNLYKEKIIRGFCHLYSGQEAV 447
           Y LHK+  GP   A +T E+ L  Y  + I+RR+ETA+ NLYK K+IRGFCHLYSGQEA 
Sbjct: 2   YTLHKITDGPPGKAVMTREEGLTYYRQMQIVRRMETAASNLYKSKVIRGFCHLYSGQEAC 61

Query: 448 AVGMRA 465
            VGM A
Sbjct: 62  CVGMEA 67


>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
          Length = 3342

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/68 (29%), Positives = 31/68 (45%)
 Frame = +1

Query: 160  AAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKL 339
            A+  LA  T+++V   VV  N   +   E TF+        LD   AT A     + LK 
Sbjct: 2125 ASPTLAETTVSEVD--VVLHNKAQALSTEETFDFSSGDNTNLDASGATEAQFQKTNPLKR 2182

Query: 340  YEXLTILR 363
             + +T+L+
Sbjct: 2183 LDPVTVLQ 2190


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,449,961
Number of Sequences: 59808
Number of extensions: 234870
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)