Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30161
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical pr...   117   4e-27
Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical pr...   115   1e-26
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    31   0.41 
AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr...    28   3.8  
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    28   3.8  
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re...    28   3.8  
AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily a...    27   5.0  
AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily a...    27   5.0  
Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical p...    27   8.8  
AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical ...    27   8.8  

>Z47812-8|CAD59156.1|  414|Caenorhabditis elegans Hypothetical
           protein T05H10.6b protein.
          Length = 414

 Score =  117 bits (282), Expect = 4e-27
 Identities = 57/103 (55%), Positives = 68/103 (66%)
 Frame = +1

Query: 157 SAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALK 336
           S A  L    +  +TA  + T        E +F  KP KLHKLD GP TS TL  EDALK
Sbjct: 15  STAMSLFARQLQSLTASGIRTQQVRLASTEVSFHTKPCKLHKLDNGPNTSVTLNREDALK 74

Query: 337 LYEXLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRA 465
            Y  + ++RR+E+A+GNLYKEK IRGFCHLYSGQEA AVGM+A
Sbjct: 75  YYRDMQVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKA 117


>Z47812-7|CAA87793.1|  397|Caenorhabditis elegans Hypothetical
           protein T05H10.6a protein.
          Length = 397

 Score =  115 bits (277), Expect = 1e-26
 Identities = 55/98 (56%), Positives = 66/98 (67%)
 Frame = +1

Query: 172 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTSEDALKLYEXL 351
           L    +  +TA  + T        E +F  KP KLHKLD GP TS TL  EDALK Y  +
Sbjct: 3   LFARQLQSLTASGIRTQQVRLASTEVSFHTKPCKLHKLDNGPNTSVTLNREDALKYYRDM 62

Query: 352 TILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGMRA 465
            ++RR+E+A+GNLYKEK IRGFCHLYSGQEA AVGM+A
Sbjct: 63  QVIRRMESAAGNLYKEKKIRGFCHLYSGQEACAVGMKA 100


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 133 DKMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPAT 303
           +K+S +  S  K L    +TKV+A     N K     + TF  +  +L +L++GP+T
Sbjct: 579 EKISNITISKTKPLK-KAVTKVSAAKKILNKKLKVNTKKTFGAEDDELEELEEGPST 634


>AF077542-2|AAC26294.1|  244|Caenorhabditis elegans Hypothetical
           protein Y57G7A.5 protein.
          Length = 244

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = +1

Query: 277 HKLDQGPATSATLTSE--DALKLYEXLTILRRIETASGNLYK-EKIIRGFCHLY 429
           H LD+       L+ E  D L   +  ++ R  ETA GN+Y  EK +R   HLY
Sbjct: 50  HVLDEQTRLRTRLSEEFGDFLNRSKR-SLTRNFETADGNVYSFEKNLRELLHLY 102


>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
           protein F29D11.1 protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 258 FECRLF-FRAVFCVCRYNRCSHFRDCVSG 175
           ++C  + + +V C+  Y RC +  DC  G
Sbjct: 97  WQCDTYTWHSVSCIAEYQRCDNITDCADG 125


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical
           protein R06C7.8 protein.
          Length = 987

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 186 NHESDCTGCSDKRKIQHEKRGDI 254
           N+ES+ TGC  +R+ +  K+GDI
Sbjct: 624 NNESEITGCKIRRRSEIIKQGDI 646


>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
           receptor-related protein protein.
          Length = 4753

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = -1

Query: 258 FECRLF-FRAVFCVCRYNRCSHFRDCVSG 175
           ++C  + + +V C+  Y RC +  DC  G
Sbjct: 97  WQCDTYTWHSVSCIAEYQRCDNITDCADG 125


>AC006712-6|AAO21405.1|  765|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform b protein.
          Length = 765

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
 Frame = +1

Query: 136 KMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQ-GPATSAT 312
           + S + P +A       + K +AP     ++   KKE TFE    K   L Q   A S  
Sbjct: 372 RASSVAPQSAPIAPTPKVAKSSAPKEPKESRKEHKKETTFEASGAKSEDLMQINNALSMI 431

Query: 313 LTSEDALK--------LYEXLT-ILRRIETASGNLYKEKII---RGFCHLYSGQEA 444
              E+ LK        + + LT +  R E      + EK+I   R  C    GQ A
Sbjct: 432 REREEKLKAELAAAQAIKDKLTSVKNRREDNPNEPFPEKLINETRALCTTQVGQNA 487


>AC006712-5|AAK39326.2|  851|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 332, isoform a protein.
          Length = 851

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 13/116 (11%)
 Frame = +1

Query: 136 KMSKLIPSAAKFLAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQ-GPATSAT 312
           + S + P +A       + K +AP     ++   KKE TFE    K   L Q   A S  
Sbjct: 372 RASSVAPQSAPIAPTPKVAKSSAPKEPKESRKEHKKETTFEASGAKSEDLMQINNALSMI 431

Query: 313 LTSEDALK--------LYEXLT-ILRRIETASGNLYKEKII---RGFCHLYSGQEA 444
              E+ LK        + + LT +  R E      + EK+I   R  C    GQ A
Sbjct: 432 REREEKLKAELAAAQAIKDKLTSVKNRREDNPNEPFPEKLINETRALCTTQVGQNA 487


>Z69902-11|CAA93766.2|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 172 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQG---PATSATLTSED 327
           +AG T  K      AT AK++   E   EIK   + K D+G   P+     +SED
Sbjct: 351 IAGVTNGKADYKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSED 405


>AL033535-1|CAB70217.1|  935|Caenorhabditis elegans Hypothetical
           protein C47D12.8 protein.
          Length = 935

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = +1

Query: 172 LAGNTITKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQG---PATSATLTSED 327
           +AG T  K      AT AK++   E   EIK   + K D+G   P+     +SED
Sbjct: 351 IAGVTNGKADYKKFATPAKWTVLSEILREIKMLPVEKKDRGNDSPSVLVITSSED 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,976,286
Number of Sequences: 27780
Number of extensions: 184093
Number of successful extensions: 461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)