Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30161
         (465 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   1.2  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   3.7  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.9  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   4.9  
DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    21   6.5  
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    21   6.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.6  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +1

Query: 148 LIPSAAKFLAGNTI--TKVTAPVVATNAKYSTKKEATFEIKPYKLHKLDQGPATSATLTS 321
           L  +  +F   NTI   K T P+   N+KY  K   T ++   +  K   G   S + +S
Sbjct: 305 LFAAMVEFAFVNTIYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQKNTTGLERSRSWSS 364

Query: 322 ED 327
            D
Sbjct: 365 LD 366


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 343 EXLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVGM 459
           + + IL +I    G+L     I G C L+   E++ VGM
Sbjct: 281 DRIDILSQINGILGSLVA---ITGGCFLFRAWESIIVGM 316


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -3

Query: 106 LSSDPSEGPHLIITIAKIYRGT*NHKRNYTSFSP 5
           LSS P E     I   K+ R    +KR  T+F P
Sbjct: 135 LSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEP 168


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 352 TILRRIETASGNLYKEKIIRGFCHLYSGQ 438
           T+L   ET +  +Y EK+     H +  Q
Sbjct: 471 TVLFATETGTSQMYAEKLSELLGHAFHSQ 499


>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 192 ESDCTGCSDKRK 227
           E++C+ CS+K+K
Sbjct: 72  ENECSPCSEKQK 83


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = +3

Query: 192 ESDCTGCSDKRK 227
           E++C+ CS+K+K
Sbjct: 72  ENECSPCSEKQK 83


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -2

Query: 77  LNNYYCQNLSRYIKSQEKLHVFQPF 3
           LN YY + LS  +   E+    +PF
Sbjct: 267 LNRYYLERLSNDLPHLEEFDWQKPF 291


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,775
Number of Sequences: 438
Number of extensions: 2569
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)