Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30161
         (465 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alp...    73   1e-13
At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alp...    72   2e-13
At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alp...    48   4e-06
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   3.6  
At4g15740.1 68417.m02396 C2 domain-containing protein similar to...    27   4.7  
At3g63500.2 68416.m07153 expressed protein                             27   4.7  
At3g63500.1 68416.m07152 expressed protein                             27   4.7  
At4g21430.1 68417.m03097 transcription factor jumonji (jmjC) dom...    27   6.2  

>At1g59900.1 68414.m06748 pyruvate dehydrogenase E1 component alpha
           subunit, mitochondrial (PDHE1-A) identical to SP|P52901
           Pyruvate dehydrogenase E1 component alpha subunit,
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
           {Arabidopsis thaliana}
          Length = 389

 Score = 72.9 bits (171), Expect = 1e-13
 Identities = 32/67 (47%), Positives = 46/67 (68%)
 Frame = +1

Query: 265 PYKLHKLDQGPATSATLTSEDALKLYEXLTILRRIETASGNLYKEKIIRGFCHLYSGQEA 444
           P+  H  D  P+ S   +S++ L  +  + ++RR+E A+ +LYK K+IRGFCHLY GQEA
Sbjct: 39  PFTAHLCDP-PSRSVESSSQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLYDGQEA 97

Query: 445 VAVGMRA 465
           VA+GM A
Sbjct: 98  VAIGMEA 104


>At1g24180.1 68414.m03050 pyruvate dehydrogenase E1 component alpha
           subunit, mitochondrial, putative similar to SP|P52901
           Pyruvate dehydrogenase E1 component alpha subunit,
           mitochondrial precursor (EC 1.2.4.1) (PDHE1-A)
           {Arabidopsis thaliana}; contains Pfam profile PF00676:
           Dehydrogenase E1 component
          Length = 393

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 33/67 (49%), Positives = 46/67 (68%)
 Frame = +1

Query: 265 PYKLHKLDQGPATSATLTSEDALKLYEXLTILRRIETASGNLYKEKIIRGFCHLYSGQEA 444
           P+  H L + P+ S   +SE+ L  +  +  +RR+E A+ +LYK K+IRGFCHLY GQEA
Sbjct: 43  PFTSH-LCESPSRSVETSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLYDGQEA 101

Query: 445 VAVGMRA 465
           +AVGM A
Sbjct: 102 LAVGMEA 108


>At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alpha
           subunit, chloroplast identical to pyruvate dehydrogenase
           E1 alpha subunit GB:AAB86803 GI:2454182 from
           [Arabidopsis thaliana]; identical to cDNA pyruvate
           dehydrogenase E1 alpha subunit mRNA, nuclear gene
           encoding plastid protein GI:2454181
          Length = 428

 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 22/52 (42%), Positives = 31/52 (59%)
 Frame = +1

Query: 301 TSATLTSEDALKLYEXLTILRRIETASGNLYKEKIIRGFCHLYSGQEAVAVG 456
           TS  +T E+ L+LYE + + R  E     +Y    + GF HLY+GQEAV+ G
Sbjct: 75  TSLLITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTG 126


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
 Frame = +1

Query: 151 IPSAAKFLAGNTITKVTAPVVATNAKYSTKKEAT------FEIKPYKLHKLDQGPATSAT 312
           +PSA     G+ +T ++AP ++   + +   + T       ++   KLH  D G   S+T
Sbjct: 255 VPSADLTEKGSDLTSLSAPAISNGGRDAASLKTTNFGSSALDLVKKKLH--DSGMPVSST 312

Query: 313 LTSE 324
           +TSE
Sbjct: 313 ITSE 316


>At4g15740.1 68417.m02396 C2 domain-containing protein similar to
           cold-regulated gene SRC2 [Glycine max] GI:2055230;
           contains Pfam profile PF00168: C2 domain
          Length = 468

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 27/122 (22%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
 Frame = +1

Query: 70  LLSVVLQKDH*INLGFIEIIIDKMSKLIPSAAKFLAGNT--ITKVTAPVVATNAKYSTKK 243
           L S  L+ D+ + LG + + +  +    P    F  GN   +  +T P+ AT    +T  
Sbjct: 117 LFSYWLEGDNDLYLGEVNVSVQDLLASNP-IPPFTNGNINKMKSMTCPIKATEKSTNTTV 175

Query: 244 EATFEIKPYKLHKL-----DQGPATSATLTSE-DALKLYEXLTILRRIETASGNLYKEKI 405
             ++  KP  + +      D  P+    +  + D  KL + L    R +  +  L  E +
Sbjct: 176 SLSYRFKPVPVEEFYPPSPDSLPSIGKPVYRDLDPAKLSQPLVFSPRFQATTTKLILELV 235

Query: 406 IR 411
           I+
Sbjct: 236 IK 237


>At3g63500.2 68416.m07153 expressed protein
          Length = 1162

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 242  KRRHSKSSPTNSINWIRAL-QHQPHSLLK 325
            K RH + SP+    W+R++    PH+ LK
Sbjct: 994  KPRHERGSPSQDTAWLRSVCSDNPHNQLK 1022


>At3g63500.1 68416.m07152 expressed protein
          Length = 887

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 242 KRRHSKSSPTNSINWIRAL-QHQPHSLLK 325
           K RH + SP+    W+R++    PH+ LK
Sbjct: 719 KPRHERGSPSQDTAWLRSVCSDNPHNQLK 747


>At4g21430.1 68417.m03097 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 728

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 5/76 (6%)
 Frame = +1

Query: 130 IDKMSKLIPSAAKFLAGNTITKVTAPVVATNA-KYSTKKEAT-FEIKPYKLHKLDQGPAT 303
           I K    + +  KFL+   +++    V   N    S K +A   E+K   +HK+ +    
Sbjct: 652 IRKNKSCVNAVLKFLSPEHVSESIKRVKELNQLPQSVKSKANKIEVKKMAIHKISEAVKE 711

Query: 304 SATLTSED---ALKLY 342
              LTS D   AL+LY
Sbjct: 712 IRELTSSDSTGALRLY 727


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,301,227
Number of Sequences: 28952
Number of extensions: 165740
Number of successful extensions: 359
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 782033640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)