Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30160
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    25   0.60 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.4  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         23   3.2  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   7.4  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   7.4  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   7.4  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   7.4  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   9.8  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 615 TTPA-TNPRRPRVAAC*PVSSDIKDLVKESMPISSCAVKKASVF 487
           T+P+ TN       +  P SSD+  L+KE+MP+    V+   V+
Sbjct: 424 TSPSNTNTSTSSTNSNKPNSSDLNMLIKETMPLPRKLVRGQDVW 467


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -3

Query: 503 RKLRSFQGHVSIRSTPDSFVS---S*PRCVTAREFR 405
           RK  S   H S + T DSF+S   S  +C + RE +
Sbjct: 385 RKSTSSSTHTSSQQTSDSFLSKRNSEKKCGSLREIK 420


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = -2

Query: 561 SSDIKDLVKESMPISSCAVKKA 496
           + +IKDL+++  PI++C + +A
Sbjct: 34  TEEIKDLLQKYPPIANCKLVQA 55


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 684 RRKTLPLEIRHSIRSNAGTRSRWTTPATN 598
           RRKT P  +  + +     +++  TPA N
Sbjct: 301 RRKTNPAGVTTTTKGKVRAKTQNATPANN 329


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 276 ANSGTSRPRCTKMVSTFPPSRKP 344
           A SG   P+    V+  PP+R P
Sbjct: 101 AGSGNLSPQIQTQVARPPPARSP 123


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +3

Query: 276 ANSGTSRPRCTKMVSTFPPSRKP 344
           A SG   P+    V+  PP+R P
Sbjct: 101 AGSGNLSPQIQTQVARPPPARSP 123


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 684 RRKTLPLEIRHSIRSNAGTRSRWTTPATN 598
           RRKT P  +  + +     +++  TPA N
Sbjct: 301 RRKTNPAGVTTTTKGKVRAKTQNATPANN 329


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 31  IEDLAHLCFTLNGVLEIVQ 87
           ++D   LC   NG+LE+++
Sbjct: 356 MDDFLGLCGPKNGLLEVIK 374


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,630
Number of Sequences: 336
Number of extensions: 3929
Number of successful extensions: 17
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)