Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30160
(709 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0) 94 4e-33
SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34) 36 0.024
SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.098
SB_53979| Best HMM Match : TetR_C (HMM E-Value=5.3) 34 0.13
SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 34 0.13
SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5) 34 0.13
SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38) 34 0.13
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14) 34 0.13
SB_9562| Best HMM Match : TetR_C (HMM E-Value=4) 34 0.13
SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015) 33 0.23
SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051) 33 0.23
SB_56000| Best HMM Match : HSA (HMM E-Value=2.8) 32 0.40
SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.52
SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36) 32 0.52
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033) 30 2.1
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_27052| Best HMM Match : Clathrin (HMM E-Value=3.3) 29 2.8
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_34626| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19) 29 4.9
SB_25918| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_42811| Best HMM Match : SRCR (HMM E-Value=0) 28 8.5
SB_26408| Best HMM Match : Lipase (HMM E-Value=0) 28 8.5
SB_57202| Best HMM Match : DUF805 (HMM E-Value=4.9) 28 8.5
>SB_48843| Best HMM Match : V_ATPase_I (HMM E-Value=0)
Length = 1128
Score = 94.3 bits (224), Expect(2) = 4e-33
Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Frame = +2
Query: 107 SEEMALCQLFIQPEAAYTSVSELGE-AGSVQFRD-LNPDVNAFQRKFVNEVRRCDEMERK 280
++E+ + +F++ ++ Y S GE GS R LNPDVNAFQRKFVNEVRRC+EMERK
Sbjct: 72 AKELLIGCMFLR-DSVYFSAEFYGEFEGSYVIRQSLNPDVNAFQRKFVNEVRRCEEMERK 130
Query: 281 LRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTENEILE 418
LR+++ E+ K + + E+ AP+PRE+IDLEA + +I E
Sbjct: 131 LRFLQKEIEKAEIAMVDTGESSEAPHPREMIDLEAEQHVHQQQIQE 176
Score = 65.3 bits (152), Expect(2) = 4e-33
Identities = 30/65 (46%), Positives = 45/65 (69%)
Frame = +2
Query: 515 EEIGMDSLTKSLISDETGQQAATRGRLGFVAGVVQRERVPAFERMLWRISRGNVFLRRAE 694
+E G T L+ +E +A +LGFV+GV+ RE+VP+FER+LWR RGNVF ++AE
Sbjct: 175 QEPGRTDDTVQLLGEEPSAASAAT-QLGFVSGVISREKVPSFERLLWRACRGNVFFKQAE 233
Query: 695 LDKPL 709
+++ L
Sbjct: 234 IEEAL 238
>SB_18046| Best HMM Match : RVT_1 (HMM E-Value=0.34)
Length = 837
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +2
Query: 230 QRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
Q K + +C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 277 QEKMXAQREKCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 332
>SB_25425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 34.3 bits (75), Expect = 0.098
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA---VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H PA V+ AP+P+++ L A L
Sbjct: 62 KCEFMQPSLKYLGHVIDKDGIH-PASDKVEAIKTAPSPQDVTQLRAFL 108
>SB_53979| Best HMM Match : TetR_C (HMM E-Value=5.3)
Length = 327
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 50 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 96
>SB_49429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 918
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 463 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 509
>SB_39617| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1084
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 608 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 654
>SB_29623| Best HMM Match : GM_CSF (HMM E-Value=5)
Length = 296
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 29 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 75
>SB_23788| Best HMM Match : RVT_1 (HMM E-Value=4.7e-38)
Length = 1122
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 642 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 688
>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1696
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 685 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 731
>SB_17897| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-14)
Length = 1217
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 415 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 461
>SB_9562| Best HMM Match : TetR_C (HMM E-Value=4)
Length = 242
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 80 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 126
>SB_46950| Best HMM Match : zf-CCHC (HMM E-Value=0.0015)
Length = 797
Score = 33.1 bits (72), Expect = 0.23
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L A L
Sbjct: 497 KCEFMQPPLKYLGHIIDKDGIHPTSDKVEAIKTAPSPQDVTQLRAFL 543
>SB_45147| Best HMM Match : zf-CCHC (HMM E-Value=0.0051)
Length = 522
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA---VKEAPRAPNPREIIDLEAHL 391
+C+ M+ L+Y+ + KDG+H PA ++ AP+P+++ L A L
Sbjct: 326 KCEFMQPSLKYLGHVIDKDGIH-PASDKLETIKTAPSPQDVTQLRAFL 372
>SB_56000| Best HMM Match : HSA (HMM E-Value=2.8)
Length = 410
Score = 32.3 bits (70), Expect = 0.40
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -2
Query: 411 ISFSVFSKCASKSMISLGLGARGASLTAGMWTPSLCTSASMY 286
+ F+ FS+ I+ L AR ++AG+WT C SA+ +
Sbjct: 346 LEFAQFSRKRVIEFIAFALWARDCCISAGLWTRDRCISAACF 387
>SB_9496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2309
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHLEKTENE 409
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L + +E
Sbjct: 536 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRLTTSSSTSE 588
>SB_49747| Best HMM Match : RVT_1 (HMM E-Value=2.1e-36)
Length = 877
Score = 31.9 bits (69), Expect = 0.52
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +2
Query: 257 RCDEMERKLRYIEAEVHKDGVHIPA--VKEAPRAPNPREIIDLEAHLEKTENE 409
+C+ M+ L+Y+ + KDG+H + V+ AP+P+++ L + +E
Sbjct: 319 KCEFMQPSLKYLGHVIDKDGIHPTSDKVEAIKTAPSPQDVTQLRLTTSSSTSE 371
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 30.7 bits (66), Expect = 1.2
Identities = 33/130 (25%), Positives = 66/130 (50%), Gaps = 13/130 (10%)
Frame = +2
Query: 224 AFQRKFVNEVRRCDEMERKLRYIE---AEVHKDGVHI-PAVKEAPRAPNPREIIDLE-AH 388
A +++ +R+ +++R+L+ +E AEV KDGV I A++ + + + + +E
Sbjct: 720 AMKQRESKRLRQAQQIQRELQELEVKQAEVEKDGVVIEKAIRSGELSKSEEQKMMMEWFK 779
Query: 389 LEKTENEILELSHNAVNLKQNYLEL--------TELRHVLEKTEAFFTAQEEIGMDSLTK 544
+ +N ++ V + NY++L E+R +L K + T Q++I + TK
Sbjct: 780 IINRKNAMIRYESELV-IHANYIQLEDQQGRLEQEIRELLMKEAS--TEQDQIEIQLKTK 836
Query: 545 SLISDETGQQ 574
L+ D GQ+
Sbjct: 837 ELV-DIVGQR 845
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +2
Query: 227 FQRKFVNEVR-RCDEMERKLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTE 403
+ R + E R ++ +R+ R VH+D + + ++KE P P+ II + + E
Sbjct: 76 YTRLVIQESRDEYEKQQRQSRENLKRVHEDTLTVQSLKETPAIEPPKNIISQKLNQETNG 135
Query: 404 NEILELS 424
++ E++
Sbjct: 136 GQLREIT 142
>SB_50638| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.00033)
Length = 311
Score = 29.9 bits (64), Expect = 2.1
Identities = 35/124 (28%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Frame = +2
Query: 164 VSELG-EAGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKL--RYIEAEVHKDGVHIPAV 334
++E+G E G+V+ R L +V + + + + R KL +Y E E KD + ++
Sbjct: 85 MAEIGVEKGNVE-RSLE-EVQSQNKDLMQQAERAKAELAKLSAKYEELEDEKDEMQ-ESL 141
Query: 335 KEAPRAPNPREIIDLEAHLEKTENEILELSHNAVNLKQNYLELTELR-HVLEKTEAFFTA 511
+ R + REI DLEA LE +E + +L + N + L ++L+ +++ E A
Sbjct: 142 SDTIREKS-REIRDLEADLEMSEQKYEDLKSSWNNTE---LVTSDLQGELMQAREEVIRA 197
Query: 512 QEEI 523
Q E+
Sbjct: 198 QSEV 201
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 29.9 bits (64), Expect = 2.1
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Frame = +2
Query: 215 DVNAFQRKFVNEVRRCDEMERKLR---YIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEA 385
D+ A Q + + E++R E R ++ E E D +H + + RE+ DL+
Sbjct: 1215 DIRAQQLEEIEELKRQIEHMRDVQNNYQKELEAKDDSLHY---LQDSKKEMMRELEDLKE 1271
Query: 386 HLEKTENEILELSHN-AVNLKQNYLELTELRHVLEKTE 496
L K ENE+ E + V NY + EL K E
Sbjct: 1272 MLHKKENELAEQAERIRVFESNNYGDAKELYETCNKLE 1309
>SB_27052| Best HMM Match : Clathrin (HMM E-Value=3.3)
Length = 203
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 5/97 (5%)
Frame = +2
Query: 266 EMERKLRYIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTE----NEILEL-SHN 430
E+ +E H++ V + +E RE+++L H E E E++EL H
Sbjct: 14 ELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHR 73
Query: 431 AVNLKQNYLELTELRHVLEKTEAFFTAQEEIGMDSLT 541
+ + +EL E R ++E E F + + ++S T
Sbjct: 74 ELVEHRELVELVEHRELVEHRELGFLSILDARVNSNT 110
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/99 (24%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
Frame = +2
Query: 287 YIEAEVHKDGVHIPAVKEAPRAPNPREIIDLEAHLEKTE----NEILEL-SHNAVNLKQN 451
++E H++ V + +E RE+++L H E E E++EL H +
Sbjct: 12 HLELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVEHRELVELVE 71
Query: 452 YLELTELRHVLEKTE-AFFTAQEEIGMDSLTKSLISDET 565
+ EL E R ++E E E+G S+ + ++ T
Sbjct: 72 HRELVEHRELVELVEHRELVEHRELGFLSILDARVNSNT 110
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 29.1 bits (62), Expect = 3.7
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Frame = +2
Query: 173 LGEAGSVQFRDLNPDVNAFQRKFVNEVRRCDE--MERKLRYIEAEVHKDGVHIPAVKEAP 346
L +A +VQ +L D+ Q++ E+R+ +E +RKL +E +V +
Sbjct: 3032 LRQADNVQL-NLRKDLEDLQKE-KEELRKENENLKKRKLSIVE-KVKVTSSECAVASQVS 3088
Query: 347 RAPN-PREIIDLEAHLEKTENEILELSHNAVNLKQNYLE 460
+ P+ E + + +E +NEI+ L + A NL++ L+
Sbjct: 3089 QVPDLGSEPVAKASSMESAQNEIIMLENQAKNLRKQILK 3127
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = -2
Query: 696 SSARRRKTLPLEIRHSIRSNAGTRSRWTTPATNPRRPR 583
S RRR++ LE R RS +G+R R +P+ +P R R
Sbjct: 125 SPVRRRRSPSLERRS--RSRSGSRERRRSPSRSPERRR 160
>SB_34626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -3
Query: 575 LVDQSRQILKTWSKNPCRFPPVR*RKLRSFQGHVSI 468
L +++ + K W + P RFP R + R F GH S+
Sbjct: 16 LREKTEKPQKGWIRKPFRFPNFRAKTERKFTGHDSL 51
>SB_15062| Best HMM Match : Tctex-1 (HMM E-Value=9.8e-19)
Length = 851
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +1
Query: 313 WCPHSRRQGSPPCSQPEGNH*LRGTFRENRKRNSRAVTQRGQLETKLSGVDRIE 474
W P SRR+ P ++P + GT R +R R R + R +L + V R+E
Sbjct: 593 WKPFSRRKARPSSARPRS---IFGTSRTSRHRRRRRIVARLRLRVHRTQV-RLE 642
>SB_25918| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +1
Query: 259 LR*NGTQTPVHRGRGAQRWCPHSRRQGSPPCSQPE 363
LR T P+ G Q W P R+ P C PE
Sbjct: 51 LRAENTVNPLGEGEHLQTWVPPLRKGQGPLCPAPE 85
>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
Length = 854
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +3
Query: 612 WSSASACPHSNGCCGVSREATSSCDVLNW 698
+S +C NG CG + + S D L+W
Sbjct: 141 YSGTGSCNFENGMCGYANDLLPSNDQLDW 169
>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
Length = 714
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 182 AGSVQFRDLNPDVNAFQRKFVNEVRRCDEMERKLRYIEAEVHKDGVHIPAV 334
+GS FR D ++RK++ C +RYIEA + G +P V
Sbjct: 348 SGSFYFR--TTDTAPYRRKYLTLDTDCFSRFTSIRYIEAAPYPGGPQLPKV 396
>SB_57202| Best HMM Match : DUF805 (HMM E-Value=4.9)
Length = 170
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = -3
Query: 92 PSCTISRTPFKVKQRCARSSIKTHTVA 12
P CT R P KV CAR I TVA
Sbjct: 73 PKCTFERIPSKVWYVCARVLITVITVA 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,140,360
Number of Sequences: 59808
Number of extensions: 542647
Number of successful extensions: 1669
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1666
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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