Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30156
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0223 - 19192411-19192951,19193363-19193388 31 0.57
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 31 1.00
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 30 1.3
10_08_0291 + 16556823-16557167,16557255-16557497,16557568-16558131 29 2.3
04_04_0476 - 25508952-25509004,25509245-25509326,25509453-255096... 29 2.3
05_04_0416 - 21088217-21088705 29 4.0
03_06_0250 + 32645600-32646649,32647549-32647791,32648008-326482... 29 4.0
11_04_0140 - 13945911-13946195,13946290-13946772 28 5.3
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 28 5.3
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 28 5.3
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252... 28 5.3
02_05_1131 - 34328168-34328557,34328838-34328957,34329067-343291... 28 5.3
12_02_0712 + 22426945-22426981,22427517-22427623,22427707-224279... 28 7.0
10_07_0100 + 12861588-12862601 28 7.0
09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116 28 7.0
08_01_0101 + 725972-726200,726407-726675,726927-727049,727742-72... 28 7.0
05_04_0290 + 19883904-19885109 28 7.0
05_01_0219 + 1638318-1638553,1639186-1639336,1639504-1639611,163... 28 7.0
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 28 7.0
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 28 7.0
01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206 28 7.0
12_02_0098 + 13592581-13593120,13595729-13596668,13596879-135975... 27 9.3
12_01_0175 + 1304138-1304255,1304597-1304793,1304873-1304953,130... 27 9.3
11_04_0364 - 16791774-16792490,16792545-16793561,16793856-167939... 27 9.3
11_01_0174 + 1394229-1394346,1394695-1394891,1394972-1395052,139... 27 9.3
03_05_0576 + 25765137-25766420 27 9.3
>05_04_0223 - 19192411-19192951,19193363-19193388
Length = 188
Score = 31.5 bits (68), Expect = 0.57
Identities = 18/47 (38%), Positives = 22/47 (46%)
Frame = -2
Query: 413 AGSKRRKSSETRGCACRWKRVVGGARATALPLGLRAVGDCGSRATSG 273
A KRR R RW+R+V AR PL RAV G + +G
Sbjct: 53 AALKRRGKLSNRTARWRWRRLVPRARRDGTPLQRRAVLRAGRQGGNG 99
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 30.7 bits (66), Expect = 1.00
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +1
Query: 256 LGAGMTPDVAREPQSPTARRPSG----SAVARAPPTTRFQRHAQPRVSELLRRFEP 411
LG+G PD + P +PT RP+ +A + PP++ F ++ P +S RR +P
Sbjct: 33 LGSG--PDPSSRPSNPTPSRPAAPRREAAASARPPSSGFAPYS-PLISTSSRRTDP 85
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -3
Query: 301 ATAAREQHPASCRRPASNKTSCGLMPFHVTLYGSPP 194
ATAA +P R P+SNK+S P SPP
Sbjct: 156 ATAADPANPNKARHPSSNKSSSPAAPRRTNSSSSPP 191
>10_08_0291 + 16556823-16557167,16557255-16557497,16557568-16558131
Length = 383
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +1
Query: 190 PTEDFRRVLREKALSHSLFY---LKLGAGMTPDVAREPQSPTARRPSGSAVAR 339
PTE R++ + + SL Y L L A + D A E + ARR AVAR
Sbjct: 323 PTEKANRIIVSQFVRGSLDYVSPLNLSAALEIDAAEEAAAAAARRRRQRAVAR 375
>04_04_0476 -
25508952-25509004,25509245-25509326,25509453-25509611,
25509702-25509767,25509898-25510067,25510172-25510262,
25510331-25510410,25510887-25511003,25511092-25511218,
25511685-25511865,25511978-25512366,25512959-25513135,
25513306-25513500,25513844-25514031,25514192-25514500,
25514592-25514637
Length = 809
Score = 29.5 bits (63), Expect = 2.3
Identities = 22/79 (27%), Positives = 38/79 (48%)
Frame = +1
Query: 157 TEITMPRLENPPTEDFRRVLREKALSHSLFYLKLGAGMTPDVAREPQSPTARRPSGSAVA 336
T + +L+ +E +R L+ K S YL GAG++P + ++ + + R GSA
Sbjct: 681 TSANLQKLQQDLSELLQRPLQPKTFSRR--YLA-GAGVSPLLQKQLEELSKRNVKGSASV 737
Query: 337 RAPPTTRFQRHAQPRVSEL 393
A +RF Q ++ L
Sbjct: 738 NANKGSRFVVIGQDQIEPL 756
>05_04_0416 - 21088217-21088705
Length = 162
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/43 (41%), Positives = 20/43 (46%)
Frame = -2
Query: 416 GAGSKRRKSSETRGCACRWKRVVGGARATALPLGLRAVGDCGS 288
GA S R RG +R GG+ A A GL AVG GS
Sbjct: 10 GAPSPRVDGGPARGARLTTRRGDGGSDAAAAGSGLPAVGSGGS 52
>03_06_0250 +
32645600-32646649,32647549-32647791,32648008-32648229,
32648375-32648443,32650681-32650768,32651147-32651230,
32651494-32651582,32651933-32652046,32652513-32652647,
32652847-32653071
Length = 772
Score = 28.7 bits (61), Expect = 4.0
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 521 ATIPPLSSRL--GLGGTRIHAILPLHRRPCRRDGRG 622
A +PP S R+ G G + +++ LHRRP R G
Sbjct: 43 ARLPPASVRVLVGFGAALLVSLVVLHRRPAARGAAG 78
>11_04_0140 - 13945911-13946195,13946290-13946772
Length = 255
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 503 DAAET*ATIPPLSSRLGLGGTRIHAILPLHRRPCRRDGR 619
D++++ P+ + GG R+H IL H R C+R+ R
Sbjct: 25 DSSQSSCIRRPMHTSKLTGGCRVHEILTGHERLCKRNFR 63
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 524 TIPPLSSRLGLGGTRIHAILPLH 592
T+PP S RLG+ +++H + P H
Sbjct: 638 TLPPSSYRLGVRPSKLHELFPSH 660
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 28.3 bits (60), Expect = 5.3
Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 271 TPDVARE-PQSPTARR-PSGSAVARAPPTTRFQRHAQPRVS 387
T DVA E P +PT RR P S A PTTR R AQ V+
Sbjct: 179 TGDVAVEAPPAPTTRRRPQTSTEAAPAPTTR--RRAQSTVA 217
>03_05_0357 -
23424234-23424567,23424796-23424923,23425024-23425205,
23425255-23425504
Length = 297
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 503 DAAET*ATIPPLSSRLGLGGTRIHAILPLHRRPCRRDGR 619
D++++ P+ + GG R+H IL H R C+R+ R
Sbjct: 25 DSSQSSCIRRPMHTSKLTGGCRVHEILTGHERLCKRNFR 63
>02_05_1131 -
34328168-34328557,34328838-34328957,34329067-34329185,
34329659-34329767,34329847-34329885,34341125-34341203,
34341483-34341547,34341850-34341905,34342141-34342233,
34342312-34342579
Length = 445
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 250 LKLGAGMTPDVAREPQSPTARRPSGSAVARAPPTTRFQRH 369
L+LGA P A PT PS S+ A A +R++RH
Sbjct: 42 LRLGAAPLPPSAAAEVEPTG-SPSSSSSAAADMISRYRRH 80
>12_02_0712 +
22426945-22426981,22427517-22427623,22427707-22427955,
22429309-22429937,22430013-22430192,22430267-22430555,
22431183-22431247,22431379-22431471,22431811-22431897,
22431971-22432071,22432571-22432692
Length = 652
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 151 YFTEITMPRLENPPTEDFRRVLREKAL 231
+F + P PP DFRR R+K L
Sbjct: 190 HFNRMARPLAPKPPISDFRRTTRKKRL 216
>10_07_0100 + 12861588-12862601
Length = 337
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 298 SPTARRPSGSAVARAPPTTRFQRHAQPRVSELLR 399
S ARRP + R PPTT A+P S +R
Sbjct: 206 SSYARRPCHAKTPRTPPTTTTTARARPSRSRTVR 239
>09_04_0328 + 16711336-16711731,16711818-16711956,16712533-16713116
Length = 372
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = -3
Query: 343 ARAPPHCRSASALWATAAREQHPAS---CRRPASNK 245
ARAPP C S+S+L A E A CR+ +S +
Sbjct: 235 ARAPPRCSSSSSLKRAAPAEDAAAEAEYCRQSSSKR 270
>08_01_0101 +
725972-726200,726407-726675,726927-727049,727742-728248
Length = 375
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -3
Query: 361 GSGLSAARAPPHCRSASALWATAAREQHPASCRRPAS 251
G G ARA A A AA+ +HP RRP S
Sbjct: 269 GGGGGQARATASAAKKQAATAAAAKRRHPRRHRRPWS 305
>05_04_0290 + 19883904-19885109
Length = 401
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = -3
Query: 343 ARAPPHCRSASALWATAAREQHPASCRRPASNKTSCGLMPFHVTL 209
A AP S SAL + AR PA R + + G+ P H TL
Sbjct: 5 APAPATLASLSALVTSLARSGRPADALRAFRDMLARGVPPDHFTL 49
>05_01_0219 +
1638318-1638553,1639186-1639336,1639504-1639611,
1639755-1639847,1639973-1640056,1640314-1640384,
1640461-1640529,1640686-1640779,1640897-1640986,
1641082-1641162,1641341-1641433,1641650-1641730,
1641815-1641884,1642022-1642110
Length = 469
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 301 PTARRPSGSAVARAPPTTRFQRHAQPRVSE 390
PTA R G AVA +PPT + +P E
Sbjct: 33 PTAGRGRGGAVAASPPTEEAVQMTEPLTKE 62
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Frame = +1
Query: 301 PT-ARRPSGSAVARAPPTTRFQRH-----AQPRVSE 390
PT RR SGS++ RAPP RH AQPR E
Sbjct: 240 PTMTRRASGSSLRRAPPPPTSPRHGASDPAQPRHQE 275
>02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -2
Query: 431 RKYCIGAGSKRRKSSETRGCACRWKRVVGGARATAL 324
RKY AG +R S R A RWK +G A+ L
Sbjct: 1538 RKYLKCAGRERSNDSSGRDPALRWKLPLGTAKKEEL 1573
>01_01_0119 + 1102872-1104170,1105419-1105516,1105849-1106206
Length = 584
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +1
Query: 274 PDVAREPQSPTARRPSGSAVARAPPTTRFQRHAQP 378
P ++ P A P + A A PT++ +RH+ P
Sbjct: 533 PPLSLPPSFAAAESPFSGSAAAALPTSKLRRHSSP 567
>12_02_0098 +
13592581-13593120,13595729-13596668,13596879-13597502,
13604810-13604946,13604994-13605035
Length = 760
Score = 27.5 bits (58), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 100 ISALISDICVPCVQLPRTFTVRSRRIMPNTTY 5
+ AL+ +I +P RTF SR ++ N TY
Sbjct: 699 LEALVLNITIPQTDALRTFLANSRLLICNNTY 730
>12_01_0175 +
1304138-1304255,1304597-1304793,1304873-1304953,
1305080-1305289,1305426-1305503,1305576-1305878
Length = 328
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 425 YCIGAGSKRRKSSETRGCACRWKRVVG 345
YC+ +RK+S GC W R+ G
Sbjct: 218 YCLKKKFSQRKASRACGCGTEWPRLEG 244
>11_04_0364 -
16791774-16792490,16792545-16793561,16793856-16793920,
16794787-16796964,16797065-16797322,16799815-16800172
Length = 1530
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = -2
Query: 317 GLRAVGDCGSRATSGVMPAPSFK*NKLWLNAFSRNTLRKSSVGGFSRRGIVISVKYNRLP 138
GLR +G + T +P + +++ + S N LR+ +GG + K RL
Sbjct: 590 GLRGIGHLNNMLT---LPPIHLRNDRI-IELRSLNKLRELRIGGLGLHLTIDGAKDARLQ 645
Query: 137 NKRLLIILSL 108
+KR L +LSL
Sbjct: 646 SKRHLQLLSL 655
>11_01_0174 +
1394229-1394346,1394695-1394891,1394972-1395052,
1395184-1395393,1395531-1395608,1395682-1395990
Length = 330
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = -2
Query: 425 YCIGAGSKRRKSSETRGCACRWKRVVG 345
YC+ +RK+S GC W R+ G
Sbjct: 218 YCLKKKFSQRKASRACGCGTEWPRLEG 244
>03_05_0576 + 25765137-25766420
Length = 427
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 274 PDVAREPQSPTARRPSGSAVARAPPTTRFQRHAQPRVSELLRR 402
P P P P +AV+ +PPT R P V +LRR
Sbjct: 80 PPQPSSPPPPPPSPPPAAAVSVSPPTQPRPRPELPPVEAVLRR 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,035,364
Number of Sequences: 37544
Number of extensions: 348562
Number of successful extensions: 1602
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1602
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -