Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30156
         (630 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF361354-1|AAL50049.1|  426|Homo sapiens voltage-dependent calci...    31   4.5  
AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein.      30   5.9  

>AF361354-1|AAL50049.1|  426|Homo sapiens voltage-dependent calcium
           channel gamma-8 subunit protein.
          Length = 426

 Score = 30.7 bits (66), Expect = 4.5
 Identities = 20/59 (33%), Positives = 27/59 (45%)
 Frame = +1

Query: 235 HSLFYLKLGAGMTPDVAREPQSPTARRPSGSAVARAPPTTRFQRHAQPRVSELLRRFEP 411
           H+ F  + G G+T  V R P  P  R P+ SA A   P T  +  A    + L R+  P
Sbjct: 370 HNAFPKEAGGGVTVTVTRPPAPPAPRHPAPSAPA---PGTLAKGAAASNTNTLNRKTTP 425


>AF253515-1|AAN70985.1| 1957|Homo sapiens BAF250b subunit protein.
          Length = 1957

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +1

Query: 247  YLKLGAGMTPDVAREPQSPTARRPS-GSAVARAPPTTRFQRHAQPRVSELLRRFEPA 414
            Y+   A M P + R PQ      PS  + ++RAP    FQR  + R+S     F P+
Sbjct: 1230 YMSSSASMQP-ITRPPQPSYQTPPSLSNHISRAPSPASFQRSLENRMSPSKSPFLPS 1285


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,389,397
Number of Sequences: 237096
Number of extensions: 1724642
Number of successful extensions: 5860
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5852
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6860268620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)