Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30156
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    27   0.15 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.4  
M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    21   9.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.9  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.9  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -3

Query: 115 CHYLHISALISDICVPCVQLP 53
           C+YL +S  +SD+CV  + +P
Sbjct: 76  CNYLLVSLAVSDLCVALLVMP 96


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 14/54 (25%), Positives = 22/54 (40%)
 Frame = -3

Query: 319 SASALWATAAREQHPASCRRPASNKTSCGLMPFHVTLYGSPPLGGFPGAASLSP 158
           S  ++ A  +  + PA  + P S       +P    + G PPL   PG+    P
Sbjct: 390 SPVSMSALVSAVRSPAGGQLPPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMP 443


>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 241 SCGLMPFHVTLYGSP 197
           S  ++P+H++ YG P
Sbjct: 71  SMNIVPYHMSPYGHP 85


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 101 VQIVTKLSRAFYLEADYILRR 163
           ++I   L   FY   DYI+R+
Sbjct: 230 IKISDVLEETFYNNGDYIIRQ 250


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 323 PLGLRAVGDCGSRATSGVMPAPSFK 249
           PLG  AV D       GV+ A +FK
Sbjct: 420 PLGRFAVRDMRQTVAVGVIKAVTFK 444


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,505
Number of Sequences: 438
Number of extensions: 3035
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)