Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30155
         (526 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)      62   4e-10
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   1e-07
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)          31   0.77 
SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.0  
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              29   3.1  
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)                      28   5.4  
SB_20302| Best HMM Match : ClpS (HMM E-Value=0.091)                    27   9.5  

>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
          Length = 270

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 45/127 (35%), Positives = 66/127 (51%)
 Frame = +3

Query: 144 MGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVV 323
           MG  MA NL+ +G+ V  +D   ++++   + G   A +              + +NK+V
Sbjct: 1   MGSPMAKNLLDQGYGVVVHDIFPESVDDLRQLGAGVAET---------PDEVAMKTNKIV 51

Query: 324 LDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 503
               L    V    + G+LLID STIDP + K+I  +A EKG  + DAPVSGG+  A+  
Sbjct: 52  --TMLPSSSV----QDGTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAG 105

Query: 504 TLAFMAG 524
           TL FM G
Sbjct: 106 TLTFMVG 112


>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 35/128 (27%), Positives = 61/128 (47%)
 Frame = +3

Query: 99  SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXX 278
           +S + + V  +G GN+G  +A  L K   +V+ +D  ++  N     G T  NS      
Sbjct: 3   TSASPRTVGLVGTGNVGSAVAVGLRKIDVSVKAFDLQQNNYNFLESTGTTLVNSPEEVTK 62

Query: 279 XXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGF 458
                 + L   + V    L   G+++  K+GS+ ID +T D N   ++  +A  KG+  
Sbjct: 63  DVDVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHA 121

Query: 459 TDAPVSGG 482
            +AP++GG
Sbjct: 122 VEAPLTGG 129


>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
          Length = 401

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 114 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 239
           K +A +GLG +G  +A  +   G    GYDP     +AA  N
Sbjct: 9   KTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESN 50


>SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 8/33 (24%), Positives = 15/33 (45%)
 Frame = +1

Query: 121 WLSSASETWEDSWLRTWLKRVSQFAATILPKMH 219
           W+    + W D W+  W+  +    A + P +H
Sbjct: 28  WMDGWMDGWMDGWMDGWMDVIDVLCAVLFPDLH 60


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 434 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 288
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 250 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 298


>SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 70

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 37  KWPRAQY*ALSVCTQPPDGRIVLTPTRMWLSSASETW 147
           KW   Q    S+C + P+ +I  +  R +LS++S+ W
Sbjct: 3   KWSGNQVLGQSLCLRGPEQKIASSCVRAFLSTSSDDW 39


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 434 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 288
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 306 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 354



 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -3

Query: 434 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 288
           Y ++   N   Y    D   S +   H+   ++   EHD    +YG+DH
Sbjct: 698 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 746


>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
          Length = 207

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 99  SSNTDKNVAFLGLGNMGGFMAANLVKKGFT-VRGYDPSKDALNAAAKNGV 245
           S    ++   L +G+  G  A  LVK GFT +   DPS+ +   A K  +
Sbjct: 61  SQGFSEDCRILDVGSGTGLQAEGLVKHGFTNIDALDPSEKSHEVARKKNL 110


>SB_20302| Best HMM Match : ClpS (HMM E-Value=0.091)
          Length = 155

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = -1

Query: 193 RTVKPFLTKFAAMNPP 146
           R V+PFLTKF ++ PP
Sbjct: 85  RVVRPFLTKFFSLMPP 100


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,476,999
Number of Sequences: 59808
Number of extensions: 417349
Number of successful extensions: 1367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1361
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)