Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30154
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   4.0  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.0  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    25   7.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    25   9.3  

>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = -1

Query: 290 YVIFYISKLIFTLKSKNPKGFKILFMVGSGLTVPLALL 177
           YV++++   +     K P  +K LF++  G+T  + +L
Sbjct: 84  YVMYFLPLEVGLFNPKTPNKWKFLFILNIGVTALITVL 121


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +2

Query: 326 SVNFDNNQSYSIFIAISKANKNHNMNLNSDK 418
           ++ FDNN+ +S+F+ I+      N+ + SD+
Sbjct: 335 TLGFDNNEIHSLFLIIASILHIGNIEVASDR 365


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +2

Query: 77  LIYISLPLINTDSFIAVELAAHLMVNGCCRSWTSAMPGAQSSH 205
           L  + +P  NT   I +  +A L +NG   ++TS+    QSSH
Sbjct: 328 LFLLCIPRTNTSLNIYL-FSAFLAINGVVLAFTSSPGFVQSSH 369


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = +2

Query: 326 SVNFDNNQSYS--IFIAISKANKNHNMNLNSDKYYEIIFL 439
           ++N  N +S +  + ++++ +N++ N NLN     EII L
Sbjct: 80  ALNITNKKSVTDNLLLSLTSSNQSTNTNLNPSSRVEIINL 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,627,188
Number of Sequences: 5004
Number of extensions: 30520
Number of successful extensions: 72
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)