Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30154
         (530 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X63679-1|CAA45218.1|  374|Homo sapiens TRAM protein protein.           31   1.9  
CR541739-1|CAG46539.1|  374|Homo sapiens TRAM1 protein.                31   1.9  
CR541654-1|CAG46455.1|  374|Homo sapiens TRAM1 protein.                31   1.9  
BT007359-1|AAP36023.1|  374|Homo sapiens translocating chain-ass...    31   1.9  
BC037738-1|AAH37738.1|  374|Homo sapiens translocation associate...    31   1.9  
BC000687-1|AAH00687.1|  374|Homo sapiens translocation associate...    31   1.9  

>X63679-1|CAA45218.1|  374|Homo sapiens TRAM protein protein.
          Length = 374

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = -1

Query: 329 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 174
           LN L L      Y+V  +F+IS+L +    K  KGF    +LF++G  LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271


>CR541739-1|CAG46539.1|  374|Homo sapiens TRAM1 protein.
          Length = 374

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = -1

Query: 329 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 174
           LN L L      Y+V  +F+IS+L +    K  KGF    +LF++G  LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271


>CR541654-1|CAG46455.1|  374|Homo sapiens TRAM1 protein.
          Length = 374

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = -1

Query: 329 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 174
           LN L L      Y+V  +F+IS+L +    K  KGF    +LF++G  LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271


>BT007359-1|AAP36023.1|  374|Homo sapiens translocating
           chain-associating membrane protein protein.
          Length = 374

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = -1

Query: 329 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 174
           LN L L      Y+V  +F+IS+L +    K  KGF    +LF++G  LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271


>BC037738-1|AAH37738.1|  374|Homo sapiens translocation associated
           membrane protein 1 protein.
          Length = 374

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = -1

Query: 329 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 174
           LN L L      Y+V  +F+IS+L +    K  KGF    +LF++G  LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271


>BC000687-1|AAH00687.1|  374|Homo sapiens translocation associated
           membrane protein 1 protein.
          Length = 374

 Score = 31.5 bits (68), Expect = 1.9
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 5/57 (8%)
 Frame = -1

Query: 329 LNILVLKQFSALYYV--IFYISKLIFTLKSKNPKGFK---ILFMVGSGLTVPLALLT 174
           LN L L      Y+V  +F+IS+L +    K  KGF    +LF++G  LT+ L++LT
Sbjct: 215 LNHLGLVLLVLHYFVEFLFHISRLFYFSNEKYQKGFSLWAVLFVLGRLLTLILSVLT 271


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,467,485
Number of Sequences: 237096
Number of extensions: 1031615
Number of successful extensions: 1935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1935
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5160237082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)