Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30152
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   4.7  
SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III sub...    26   4.7  

>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -2

Query: 206 INFKLDIRPANRSPHLDSWNDKENQNRMNI 117
           IN    I P NR  +LDS +D  NQN  NI
Sbjct: 13  INLSSSIHP-NRDSYLDSQSDPLNQNLYNI 41


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
 Frame = -2

Query: 635  VDSNIINKL-QTVNMVFANLSQNAYR---CN-SSSVRLRQY 528
            VD ++ N+L QT++ +F+NL++ ++     N S+ V+ RQY
Sbjct: 4245 VDGDVANQLLQTIDKIFSNLTKGSFEKLTFNFSNFVKYRQY 4285


>SPBC14C8.12 |rpb8||DNA-directed RNA polymerase I, II and III
           subunit Rpb8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 125

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 262 SADMQLFKYVNTITVLSSR*ILNLTLDL 179
           S D Q ++ V+ IT +S +  +NLTLD+
Sbjct: 15  SVDKQKYQRVSRITAVSGQNDMNLTLDI 42


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,900
Number of Sequences: 5004
Number of extensions: 55908
Number of successful extensions: 115
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)