Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30152
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)             30   2.2  
SB_54922| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0028)               30   2.2  
SB_6138| Best HMM Match : 7tm_1 (HMM E-Value=2e-19)                    29   5.0  
SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)                   28   8.8  

>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
          Length = 818

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  TYLVACCSTNVCNRCIYLYSCDSGSLC 145
           T L+ CC T+ C+ CI  Y  ++   C
Sbjct: 69  TVLIPCCGTSYCDECIRTYLLENEQEC 95


>SB_54922| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0028)
          Length = 116

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 65  TYLVACCSTNVCNRCIYLYSCDSGSLC 145
           T L+ CC T+ C+ CI  Y  ++   C
Sbjct: 69  TVLIPCCGTSYCDECIRTYLLENEQEC 95


>SB_6138| Best HMM Match : 7tm_1 (HMM E-Value=2e-19)
          Length = 494

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -2

Query: 425 DVIPKYLNTTIVSLYWY-DIYYTKLNTK 345
           DV+PK  +T + ++YWY +IY   + T+
Sbjct: 81  DVLPKLNHTPLAAIYWYVNIYQNSILTR 108


>SB_58524| Best HMM Match : Ank (HMM E-Value=3.4e-16)
          Length = 1003

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
 Frame = +1

Query: 580 KFAKTMLTVCNLFIIFESTIIKAGNVTFG----HYW*IRKTNYWTW 705
           K  +T LTVCN+F     T+++   + +G    ++W  R + ++T+
Sbjct: 621 KKRETSLTVCNIFNSMGPTVLRIVRLVYGSVSSNHWSCRASRFFTF 666


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,340,153
Number of Sequences: 59808
Number of extensions: 385574
Number of successful extensions: 819
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 814
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)