Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30152
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter...    28   5.9  
AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine re...    28   5.9  
U58748-1|ABN43078.1|  173|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>U58736-1|AAB00598.1|  302|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 3 protein.
          Length = 302

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 591 NHVNGLQFVYNI*VDYYQSRQCDFWTLLV 677
           NHV  LQ V N  VD+ ++R  D W  +V
Sbjct: 38  NHVQHLQSVMNSEVDFCKTRSRDLWREMV 66


>AC006617-5|AAF39775.1|  325|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 65 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = -2

Query: 410 YLNTTIVSLYWYDIYYTKLNTKWRDHKAMATLRP 309
           YL+ + V+++   +Y+  + + W+ H+AM  L+P
Sbjct: 186 YLDNSTVAMFLVTLYFPMIGSYWK-HQAMKLLKP 218


>U58748-1|ABN43078.1|  173|Caenorhabditis elegans Hypothetical
           protein ZK180.7 protein.
          Length = 173

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +2

Query: 80  CCSTNVCNRCIYLYSCDSGSLCHSMNPNVETD 175
           CCSTN+CN   +    D   L  S   NV TD
Sbjct: 117 CCSTNLCNDVNHKRVYDKYGLLISFADNVFTD 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,513,226
Number of Sequences: 27780
Number of extensions: 304599
Number of successful extensions: 761
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)