Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30152
         (723 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   2.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   5.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   5.1  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   6.7  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   6.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   8.9  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 176 NRSPHLDSWNDKENQNRMNINKYIDYK 96
           N + +  ++N+K N N  N NK + YK
Sbjct: 92  NNNNYKYNYNNKYNYNNNNYNKKLYYK 118


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 18/70 (25%), Positives = 29/70 (41%)
 Frame = -2

Query: 557 NSSSVRLRQYIAXXXXXXXXXXXXLYRTKTST*QQVSESYFDSNDVIPKYLNTTIVSLYW 378
           N+S+VR   YI              Y     T + +++S     +  P Y N T+V L W
Sbjct: 164 NTSAVRYTHYIGTLATNDNILESISYVKDDGT-EGIAKSGDVLVETEPIYYNLTMVKLNW 222

Query: 377 YDIYYTKLNT 348
                TK+++
Sbjct: 223 PKKRVTKMSS 232


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +3

Query: 60  SVPTWLRVVRLTFVI 104
           ++PTWL  +R+  VI
Sbjct: 47  NIPTWLSFIRIVLVI 61


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -2

Query: 395 IVSLYWYDIYYTKLNTKWRDHKAMATLRPKK*PIK 291
           ++ L +  ++Y++L +  R+H+ M   + KK  +K
Sbjct: 230 VIPLIFIILFYSRLLSSIRNHEKMLREQAKKMNVK 264


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 499 KFTINKFTAIYCLSRT 546
           +FT+ KF   YC S+T
Sbjct: 208 RFTLEKFFTDYCNSKT 223


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 499 KFTINKFTAIYCLSRT 546
           +FT+ KF   YC S+T
Sbjct: 208 RFTLEKFFTDYCNSKT 223


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = -2

Query: 395 IVSLYWYDIYYTKLNTKWRDHKAMATLRPKK*PIK 291
           ++ L +  ++Y++L +  R+H+ M   + KK  +K
Sbjct: 230 VIPLIFIILFYSRLLSSIRNHEKMLREQAKKMNVK 264


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +2

Query: 92  NVCNRCIYLYSCDSGSLCHSMNPNVETDWQV 184
           N CNRC       + +L   M  N   +WQ+
Sbjct: 63  NHCNRCTSRQIGIANTLIPFMQQNYPYEWQL 93


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 443 SYFDSNDVIPKYLNTTIVS 387
           S  DS + +P+YL+  ++S
Sbjct: 431 SVTDSENTVPRYLSPDVIS 449


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 209 AINFKLDIRPANRSPHLDSWNDKENQNRMNINKYIDYKR*SNNTQPSR 66
           A N   D + AN+       ++++N N+ N N+  D K+  N    ++
Sbjct: 442 ANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNK 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,142
Number of Sequences: 438
Number of extensions: 4101
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)