Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30150
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0123 - 20997498-20997512,20998015-20998100,20999066-209991...    29   2.7  
01_07_0084 + 40976976-40977164,40978174-40978201,40978445-409785...    28   6.3  
01_06_0960 - 33376012-33376433,33376566-33376731,33376848-333770...    28   6.3  
10_08_0122 - 14982676-14983043,14983957-14985145                       28   8.4  

>09_06_0123 -
           20997498-20997512,20998015-20998100,20999066-20999198,
           20999264-20999341,21000130-21000216,21001164-21001254,
           21001338-21001488,21001567-21002296,21002404-21002820
          Length = 595

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +2

Query: 77  YSSHCPMRESNSRPSAHQSGPLITAP*PEFLAGSLVGRVPDPVVDYAKH 223
           Y  H PM     +P  +Q GP    P P    G  +  VP P V Y  H
Sbjct: 333 YPRHTPMPPQQQQPGIYQPGPFPRPP-PPPPPGHFM--VPQPFVPYVPH 378


>01_07_0084 +
           40976976-40977164,40978174-40978201,40978445-40978575,
           40978941-40979434,40979516-40979609,40979686-40979779,
           40980342-40980444,40980550-40980601,40980716-40980756,
           40980881-40980960,40981490-40981936,40982378-40982554,
           40983205-40983803,40983886-40985040
          Length = 1227

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/46 (34%), Positives = 24/46 (52%)
 Frame = -2

Query: 236 PSKSRASHNLPPDRERDPLKIRRETQAKEQ*LAALTDAPRVVSSIP 99
           PS S+ S   PPD+    + ++    AKE  +  L D+ RV+  IP
Sbjct: 539 PSTSKQSTLSPPDKPEIAVSLKLNVTAKENFIEKL-DSKRVIWQIP 583


>01_06_0960 -
           33376012-33376433,33376566-33376731,33376848-33377033,
           33377206-33377442
          Length = 336

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +1

Query: 367 PSIRPACM*HILHTNRYDDLTGDSPFAIMVLDTSNSKRQKGSFITRFDALPSEHTVQFVY 546
           P +R AC+        Y D+   SP+   +    +  R +G F++    L  + T Q+V 
Sbjct: 233 PELRKACVAGDPFDKTYVDMDPGSPYTFDLSYYRDVYRNRGLFVSDQALLNDKWTKQYVE 292

Query: 547 LRSHSPTTDASF 582
             + + +TD  F
Sbjct: 293 RMASADSTDEYF 304


>10_08_0122 - 14982676-14983043,14983957-14985145
          Length = 518

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 346 PPRQSEKPSIRPAC 387
           PPRQ + PS+RP+C
Sbjct: 488 PPRQPQHPSLRPSC 501


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,668,081
Number of Sequences: 37544
Number of extensions: 357997
Number of successful extensions: 721
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)