Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30150
         (708 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.52 
SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_31543| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  

>SB_13096| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1465

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 533  TVCSEGKASNRVMKEPFWRFEFDVSKTMIANGESPVRSSYRFVCRMCY 390
            T CS    +   M+   WRF F +S +   +GE  V+S YR   R C+
Sbjct: 966  TPCSATCGTGHQMR---WRFCFPLSSSKNESGECKVKSPYRVESRFCF 1010


>SB_11678| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 330 GGKNYTTETV*ETFNKTRLHVTHSAYESIR*PYRGFPVCDHG 455
           GGK+YT E   + FNK+    TH    +   PY+   VC HG
Sbjct: 190 GGKSYTCEHCGKRFNKSYNLKTHLRVHTGERPYQ-CEVCGHG 230


>SB_36474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1608

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 407 VCRMCYMQAGLIEGFSDCLGGVVFSPTYADSLERLYQLLL 288
           VC +CY+ A  ++ F D LG VV     +D  E +Y   L
Sbjct: 525 VCHVCYVGASAVDRFHDGLGRVVPGWQSSDGRECVYSRYL 564


>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1888

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 69   NKSIHHTARCGNRTHDPRRISQ 134
            N++  H+A CGN  H PRR+ +
Sbjct: 1044 NQTQSHSAACGNCVHPPRRVPE 1065


>SB_31543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 496 ITRFDALPSEHTVQFVYLRSHSPTTDASFNARRN 597
           I R +  P  H++Q  + R HS TTD+  + +RN
Sbjct: 91  IIRREPRPRPHSIQITH-RQHSSTTDSFLDTQRN 123


>SB_29364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 884

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 421 DLTGDSPFAIMVLDTSNSKRQKGSFITRFDALPSEHTVQFVYLRSHSPTTDASFNAR 591
           DL    P  I+ +    S+  KG+  T    L S H    +Y+ S + + D SF  R
Sbjct: 453 DLLAQKPMNIVAIVNEESRFPKGTDTTMLQKLQSNHNDSSLYIPSKN-SFDMSFGVR 508


>SB_42720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2391

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 407 VCRMCYMQAGLIEGFSDCLGGVVFSPTYADSLERLYQLLL 288
           VC +CY+ A  ++ F D LG VV     +D  E  Y   L
Sbjct: 180 VCHVCYVGASAVDRFHDGLGRVVPGWQSSDGREGGYSRYL 219


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,667,470
Number of Sequences: 59808
Number of extensions: 425053
Number of successful extensions: 916
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)