Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30150
         (708 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M90475-1|AAA61089.1|   78|Homo sapiens T-cell receptor beta prot...    31   4.0  

>M90475-1|AAA61089.1|   78|Homo sapiens T-cell receptor beta
           protein.
          Length = 78

 Score = 31.1 bits (67), Expect = 4.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 472 SKRQKGSFITRFD-ALPSEHTVQFVYLRSHSPTTDASFNARRNTVIIEDLN 621
           S+  K  F  R + A PS+ +V F   R  +  T+A F       ++EDLN
Sbjct: 23  SRLNKREFSLRLESAAPSQTSVYFCASRDRTANTEAFFGQGTRLTVVEDLN 73


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,837,471
Number of Sequences: 237096
Number of extensions: 1927984
Number of successful extensions: 3181
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3181
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)