Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30150
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14300.1 68416.m01809 pectinesterase family protein contains ...    30   1.3  
At4g38170.1 68417.m05389 far-red impaired responsive protein, pu...    28   5.3  
At1g33790.1 68414.m04177 jacalin lectin family protein similar t...    28   7.0  
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain...    27   9.2  

>At3g14300.1 68416.m01809 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 968

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = +1

Query: 4   TYVLVYVKMCTYIDNKHLDEDKTNLFI 84
           T  ++YVK  TY++N  + +DK N+FI
Sbjct: 687 TMFVIYVKAGTYVENVLMKKDKWNVFI 713


>At4g38170.1 68417.m05389 far-red impaired responsive protein,
           putative / SWIM zinc finger family protein similar to
           far-red impaired response protein [Arabidopsis thaliana]
           GI:5764395; contains Pfam profile PF04434: SWIM zinc
           finger
          Length = 545

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 413 DTMTLPGIPRLRSWS*IHRIRNAKRAPS*RDSMPYPLNIRFNSST*EATR 562
           + + LP    LR W+   +IR  +  P   +     LN+ FNS   EAT+
Sbjct: 381 NVLALPSRYLLRRWTKEAKIRGTEEQPEFSNGCQESLNLCFNSLRQEATK 430


>At1g33790.1 68414.m04177 jacalin lectin family protein similar to
           myrosinase binding protein homolog GI:2997767 from
           [Arabidopsis thaliana]; contains contains Pfam profile
           PF01419 jacalin-like lectin domain
          Length = 445

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +1

Query: 487 GSFITRFDALPSEHTVQFVYLRSHSPTTDASFNARRNTVIIEDLNITSLLK 639
           G++ +RF   PS  T+Q        P +D  FN  RN  + +  N  S +K
Sbjct: 289 GAYFSRFILPPSAETLQAKGGEGGDPWSDGVFNGVRNIYVGQGENGVSAVK 339


>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
           domain-containing protein contains Pfam PF01417: ENTH
           domain. ENTH (Epsin N-terminal homology) domain;
           similar to Af10-protein - Avena fatua, EMBL:U80041
          Length = 1024

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 406 TNRYDDLTGDSPF-AIMVLDTSNSKRQKGSFITRFDALP 519
           T  +DD  GDSPF AI   DT  S+ Q  SF   F   P
Sbjct: 443 TQPFDDPFGDSPFKAITSADTETSQHQ--SFGVPFQPTP 479


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,152,330
Number of Sequences: 28952
Number of extensions: 281791
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)