Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30147
         (738 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1786| Best HMM Match : HC2 (HMM E-Value=0.12)                       29   3.0  
SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_339| Best HMM Match : Sterile (HMM E-Value=4.7)                     28   6.9  

>SB_1786| Best HMM Match : HC2 (HMM E-Value=0.12)
          Length = 379

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 421 ISNNSKSHVVACN*VNSIRTVANNIRTLKNAWKTSFNYGIRTVKTEVSTRNT 576
           ++N   S     N +N++RTVAN +  L+     +  Y IRTV  E++   T
Sbjct: 317 VANEMYSLRTVANEMNALRTVANEMYALRTV--ANEMYAIRTVANEMNALRT 366



 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 421 ISNNSKSHVVACN*VNSIRTVANNIRTLKNAWKTSFNYGIRTVKTEVSTRNT 576
           I+N   +     N +N++RTVAN +  L+     +  Y +RTV  E+    T
Sbjct: 7   IANEMNALRTVANEMNALRTVANEMNALRTV--ANEMYALRTVANEMYALRT 56


>SB_41459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1675

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 301  YHISFGSTRNFISITKRYDFYSIEI*KGSSNPFLAPEVTA 182
            Y+++       I +  R  FYS+++  G   P   PE+ A
Sbjct: 1474 YYVAAKGQAKHIVVAHRNQFYSVDVYDGKGQPLGEPEIAA 1513


>SB_339| Best HMM Match : Sterile (HMM E-Value=4.7)
          Length = 206

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 301 YHISFGSTRNFISITKRYDFYSIEI*KGSSNPFLAPEVTA 182
           Y+++       I +  R  FYS+++  G   P   PE+ A
Sbjct: 130 YYVAAKGQAKHIVVAHRNQFYSVDVYDGKGQPLGEPEIAA 169


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,866,406
Number of Sequences: 59808
Number of extensions: 417221
Number of successful extensions: 888
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)