Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30146
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0470 + 34164873-34165856,34166335-34166568,34166680-341670... 111 4e-25
08_02_0009 + 11216532-11218687,11220727-11225998 38 0.006
08_02_0003 + 11180421-11180757,11180773-11185715 38 0.006
08_02_0002 + 11173365-11173512,11173528-11178470 38 0.009
11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,952... 38 0.011
02_02_0080 + 6598427-6598663,6599246-6599391,6599567-6599669,660... 32 0.56
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 29 4.0
05_06_0042 - 25131962-25132149,25132261-25132345,25132750-251327... 29 4.0
04_03_0041 + 10046063-10046170,10046284-10046742 29 4.0
01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416 29 4.0
12_01_0612 - 5044639-5044858,5045010-5045167,5045440-5045684,504... 29 5.2
12_01_0879 + 8430683-8430839,8431523-8431824 28 6.9
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223... 28 6.9
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 28 6.9
02_05_1091 + 34044999-34045082,34046848-34047048,34047312-340475... 28 6.9
06_03_1056 + 27239176-27242361 28 9.2
01_06_1629 - 38749184-38749303,38749389-38749479,38749555-387496... 28 9.2
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980... 28 9.2
>03_06_0470 +
34164873-34165856,34166335-34166568,34166680-34167006,
34168426-34168716
Length = 611
Score = 111 bits (268), Expect = 4e-25
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 4/190 (2%)
Frame = +1
Query: 181 PLDPSSFSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESI 360
P+DP S++ + V L+ +DF ++ SA L + GD++LD+ L + S
Sbjct: 3 PVDPHSYTDGDHPVTAKAALAFYLDFAASTIHASALLTLSAPHS-GDLLLDTRALAVHSA 61
Query: 361 ELDG---AQLTYKLDDPV-PNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQP 528
+ + + L D P GS LT+ LP D + ++TSPSA+ALQWL P
Sbjct: 62 STASGPPSPIPFSLADAADPVLGSALTLTLPP-----DTTSFLLTFSTSPSASALQWLSP 116
Query: 529 AQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALRGESRST 708
QT+ P++FSQCQ IHARS+ PC DTP + T+D + P + + ++A R SR
Sbjct: 117 PQTASSL-PFVFSQCQSIHARSVFPCHDTPAARITFDLLLNVPTQLSA-VAAARHVSRRD 174
Query: 709 KRPSISRCLC 738
PS R C
Sbjct: 175 PLPSDHRGAC 184
>08_02_0009 + 11216532-11218687,11220727-11225998
Length = 2475
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/121 (23%), Positives = 53/121 (43%)
Frame = +1
Query: 220 VIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDD 399
V+++ L V+ EN N D+ L + D+ + + +++ +L D
Sbjct: 1676 VLENRLNKLEVELENLKNN----CDIKALPENKDIQNTEFKEQLITLKDSNTAKIIQLRD 1731
Query: 400 PVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQP 579
+ N+G+K ++LP + G ++ +KIK T S L + T H F++C
Sbjct: 1732 AITNFGNKYIVRLPFKEILGIRIPVKIKLTPKVSYKILALVDTGCTKNIIHDKYFTRCPE 1791
Query: 580 I 582
I
Sbjct: 1792 I 1792
>08_02_0003 + 11180421-11180757,11180773-11185715
Length = 1759
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/121 (23%), Positives = 53/121 (43%)
Frame = +1
Query: 220 VIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDD 399
V+++ L V+ EN N D+ L + D+ + + +++ +L D
Sbjct: 960 VLENRLNKLEVELENLKNN----CDIKALPENKDIQNTEFKEQLITLKDSNTAKIIQLRD 1015
Query: 400 PVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQP 579
+ N+G+K ++LP + G ++ +KIK T S L + T H F++C
Sbjct: 1016 AITNFGNKYIVRLPFKEILGIRIPVKIKLTPKVSYKILALVDTGCTKNIIHDKYFTRCPE 1075
Query: 580 I 582
I
Sbjct: 1076 I 1076
>08_02_0002 + 11173365-11173512,11173528-11178470
Length = 1696
Score = 37.9 bits (84), Expect = 0.009
Identities = 28/121 (23%), Positives = 53/121 (43%)
Frame = +1
Query: 220 VIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDD 399
V+++ L V+ EN N D+ L + D+ + + +++ +L D
Sbjct: 897 VLENRLNKLEVELENLKNN----CDIKALPENKDIQNTEFKEQLITLKDSNTVKIIQLRD 952
Query: 400 PVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQP 579
+ N+G+K ++LP + G ++ +KIK T S L + T H F++C
Sbjct: 953 AITNFGNKYIVRLPFKEILGIRIPVKIKLTPKVSYKILALVDTGCTKNIIHDKYFTRCPE 1012
Query: 580 I 582
I
Sbjct: 1013 I 1013
>11_03_0065 - 9522478-9525335,9525513-9526028,9526432-9527247,
9527440-9527767
Length = 1505
Score = 37.5 bits (83), Expect = 0.011
Identities = 26/121 (21%), Positives = 53/121 (43%)
Frame = +1
Query: 220 VIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDD 399
V+++ L ++ EN N D+ L + D+ + + +++ +L D
Sbjct: 711 VLENRLNKLEIELENLKNN----CDIKALPENKDIQNTEFKEQLITLKDSNTAKIIQLRD 766
Query: 400 PVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQP 579
+ N+G+K ++LP + G ++ +K+K T S L + T H F++C
Sbjct: 767 AITNFGNKYIVRLPFKEILGIRIPVKVKLTPKVSYKILALVDTGCTKNIIHDKYFTRCPE 826
Query: 580 I 582
I
Sbjct: 827 I 827
>02_02_0080 +
6598427-6598663,6599246-6599391,6599567-6599669,
6600407-6600593,6600699-6600792,6601290-6601443,
6601751-6601855,6601937-6602053,6602248-6602361,
6602891-6603073,6603207-6603486,6603565-6603686,
6603763-6603860,6603941-6604118,6604439-6604553,
6604656-6604723,6604825-6604902,6604986-6605060,
6605156-6605338
Length = 878
Score = 31.9 bits (69), Expect = 0.56
Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 12/170 (7%)
Frame = +1
Query: 208 PEQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIE----------- 354
P A + L L D + GS + VDV +VL+++EL +
Sbjct: 18 PGFAAPRRYDLRLVPDLDGCAFTGSVDVSVDVTAPTRFLVLNAAELEVSPGGVQFKPHGA 77
Query: 355 SIELDGAQLTYKLDDPVPNYGSKLTIQLPKRASSGD-KLKIKIKYTTSPSATALQWLQPA 531
EL A++T +D + L I+ + G+ L I K T + +
Sbjct: 78 EQELHPAEVTNVPEDEI------LIIRFNEVLPVGEGTLVIAFKGTLNDKMHGF-YRSVY 130
Query: 532 QTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMS 681
+ +G+K +Q +P AR PC D P K + + P E TV +S
Sbjct: 131 ELNGEKKNMAVTQFEPADARRCFPCWDEPSFKAIFKITLEVPSE-TVALS 179
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 406 PNYGSKL-TIQLPKRASSGDKLKIKIKYTTSPSATALQWLQ 525
P YG+ + T+ +PK+ SS K K+ + SA A WL+
Sbjct: 328 PEYGNGVSTVSVPKQYSSTTKTSSGNKFQSVSSARAAPWLE 368
>05_06_0042 -
25131962-25132149,25132261-25132345,25132750-25132797,
25133084-25133197,25133279-25133410,25134029-25134124,
25134771-25135005,25135054-25135322,25135408-25135491,
25136529-25136703,25138018-25138229
Length = 545
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 589 RSILPCQDTPFVKFTYDAEVTAPEEFTVLMSALRGESRSTKRPSI 723
R +LP +D FV +TY ++ ++ L+ +S +KRP+I
Sbjct: 454 RKMLPSKDANFVGYTYKNFEIVNDDEVAGIAELKKKSSKSKRPTI 498
>04_03_0041 + 10046063-10046170,10046284-10046742
Length = 188
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 409 NYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPAQTSGK 546
NY L+IQL AS G +K+K Y S +A +PA + K
Sbjct: 71 NYKKMLSIQLRGFASKGKLVKVKASYKLSDAAKDSPKAKPAAPAPK 116
>01_01_0431 + 3271839-3273192,3273481-3275148,3275346-3275416
Length = 1030
Score = 29.1 bits (62), Expect = 4.0
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 196 SFSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELT--IESIELD 369
S S P + I ++ N++F N LNG+ + L + + LDS++L+ +E I +
Sbjct: 425 SMSGPIPSWIGNLIQLNNLNFRNNNLNGTIPKSIFALPALQSLYLDSNQLSGHLEDIPVP 484
Query: 370 GAQLTYKLD 396
+ Y +D
Sbjct: 485 LSSSVYDID 493
>12_01_0612 -
5044639-5044858,5045010-5045167,5045440-5045684,
5046006-5046294,5047540-5048561,5049320-5049389
Length = 667
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 436 LPKRASSGDKLKIKIKYTTSPSATALQWLQPAQTSGKK 549
LP+ + KL+ T+P A LQW+ +++SG +
Sbjct: 93 LPQNKHTETKLQAPCPVVTAPLANGLQWVPKSRSSGSE 130
>12_01_0879 + 8430683-8430839,8431523-8431824
Length = 152
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +1
Query: 646 VTAPEEFTVLMSALRGESRSTKRPSISRCLCRR 744
V++P +T L A RG R S RC CRR
Sbjct: 2 VSSPSSWTNLTPASRGPREVEARSSRLRCACRR 34
>11_01_0298 -
2231063-2232015,2232124-2232798,2232918-2232946,
2233053-2233513,2233593-2233717,2233801-2234098,
2235004-2236234,2236562-2237233,2237329-2238539
Length = 1884
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +1
Query: 286 TLDVDVLQDIGDVVLDSSELTIESIELDG--AQLTYKLDDPV-PNYGSKLTIQLPKRASS 456
TL + +LQ + D V+DS EL E E +G ++ Y++D GS+ + +A +
Sbjct: 453 TLKLRILQLLCDHVIDSEELKTELEEREGYSEEMEYEMDSSTFAEVGSRSVLTRGSKAPA 512
Query: 457 GDKL 468
KL
Sbjct: 513 CKKL 516
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 28.3 bits (60), Expect = 6.9
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 1/147 (0%)
Frame = +1
Query: 238 LSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIE-SIELDGAQLTYKLDDPVPNY 414
L L D +GSA + V V +VL+++EL ++ S +L +++ +D +
Sbjct: 25 LRLRPDLAACAFSGSAAVAVAVSAPTRFLVLNAAELAVDGSSDLVPSEVVQFEEDEIVVI 84
Query: 415 GSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARS 594
G + + + LK+ T + + + G+ +Q + AR
Sbjct: 85 GFGQDLPIGEGV-----LKMDFTGTLNDQMRGF-YRSKYEYKGESRNMAVTQFEAADARR 138
Query: 595 ILPCQDTPFVKFTYDAEVTAPEEFTVL 675
PC D P K + + P E L
Sbjct: 139 CFPCWDEPAFKAKFKLTLEVPSELVAL 165
>02_05_1091 +
34044999-34045082,34046848-34047048,34047312-34047523,
34047846-34048413
Length = 354
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 524 CNHCNAVADGDVVYLILIFNLSPLEARFGNC 432
C+H NA++ G +IF S L A G+C
Sbjct: 146 CSHQNALSSGTTALTAMIFGRSLLVANAGDC 176
>06_03_1056 + 27239176-27242361
Length = 1061
Score = 27.9 bits (59), Expect = 9.2
Identities = 32/126 (25%), Positives = 56/126 (44%), Gaps = 9/126 (7%)
Frame = +1
Query: 184 LDPSSFSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSEL------ 345
L+ + + P + I +T L +D LNGS + L + + L +EL
Sbjct: 420 LEQNELAGPVPSAIGDLTQLLKLDLSGNSLNGSIPPSLGNLHQLTLLNLSGNELTGHVPS 479
Query: 346 ---TIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQ 516
T+ S+ L +LD P+P +LT +L A SG++ ++ T S +L+
Sbjct: 480 ELFTLSSLSLLMDLSDNQLDGPIPPDVGQLT-KLAFMALSGNRFSGEVP-TELESCQSLE 537
Query: 517 WLQPAQ 534
+L A+
Sbjct: 538 FLDLAR 543
>01_06_1629 -
38749184-38749303,38749389-38749479,38749555-38749630,
38749860-38749932,38750488-38750580,38750827-38750883,
38751406-38751492,38751600-38751674,38751779-38751826
Length = 239
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 280 SATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKR 447
SA +D V+ GDVVLD +E+T ++I+L GA L D +L + P +
Sbjct: 9 SALVDNHVVP--GDVVLDLTEMTNQTIKL-GAGLRQDCDTIQATSAGRLRLSKPNK 61
>01_06_0147 +
26997641-26997688,26997783-26997857,26997966-26998052,
26998566-26998622,26998867-26998959,26999528-26999600,
26999830-26999905,27000217-27000280,27000951-27000980,
27001251-27001367,27002742-27002782,27002870-27003176,
27003279-27003368,27003479-27003541,27003678-27003752,
27003922-27003984,27004714-27004784,27004885-27005068
Length = 537
Score = 27.9 bits (59), Expect = 9.2
Identities = 20/56 (35%), Positives = 30/56 (53%)
Frame = +1
Query: 280 SATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKR 447
SA +D V+ GDVVLD +E+T ++I+L GA L D +L + P +
Sbjct: 9 SALVDNHVVP--GDVVLDLAEMTNQTIKL-GAGLRQDCDTIQATSAGRLRLSKPSK 61
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,122
Number of Sequences: 37544
Number of extensions: 324511
Number of successful extensions: 840
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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