Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30146
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13520.1 68418.m01561 peptidase M1 family protein similar to ...   120   1e-27
At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011 P...    40   0.001
At1g73960.1 68414.m08565 expressed protein similar to TATA bindi...    38   0.009
At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative (CH...    31   0.82 
At1g50570.1 68414.m05675 C2 domain-containing protein low simila...    31   1.1  
At4g10710.1 68417.m01751 transcriptional regulator-related simil...    30   1.4  
At3g10740.1 68416.m01293 glycosyl hydrolase family protein 51 si...    30   1.4  
At3g43540.2 68416.m04623 expressed protein hypothetical protein ...    29   3.3  
At3g43540.1 68416.m04622 expressed protein hypothetical protein ...    29   3.3  
At1g74400.1 68414.m08619 pentatricopeptide (PPR) repeat-containi...    29   3.3  
At1g78540.1 68414.m09154 transcription factor-related weak simil...    29   4.4  
At1g60080.1 68414.m06769 3' exoribonuclease family domain 1-cont...    28   5.8  
At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put...    28   7.7  
At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domai...    28   7.7  

>At5g13520.1 68418.m01561 peptidase M1 family protein similar to
           SP|P09960 Leukotriene A-4 hydrolase (EC 3.3.2.6) (LTA-4
           hydrolase) {Homo sapiens}; contains Pfam profile
           PF01433: Peptidase family M1
          Length = 616

 Score =  120 bits (288), Expect = 1e-27
 Identities = 66/172 (38%), Positives = 99/172 (57%), Gaps = 3/172 (1%)
 Frame = +1

Query: 178 SPLDPSSFSRPEQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIES 357
           +P+DP SF+     +  HV LSL +DF   +++GSA L +      G++ LD+  ++I  
Sbjct: 2   APIDPHSFTDSSHPLTTHVALSLYLDFNTSIIHGSALLTLSSAFS-GELSLDTRCISIAM 60

Query: 358 I--ELDGAQLTYKLDD-PVPNYGSKLTIQLPKRASSGDKLKIKIKYTTSPSATALQWLQP 528
           +   L    + Y +   P    G+++ + L  ++S      + I Y+TSPSA+ALQWL P
Sbjct: 61  VLDPLTLEPIPYSVSTTPDRIRGTEVVVVLSGQSS------LLIVYSTSPSASALQWLSP 114

Query: 529 AQTSGKKHPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVLMSA 684
            QT  K HPY+++QCQ IHARSI PCQDTP  +  YD  +  P   + +MSA
Sbjct: 115 LQTFSKLHPYVYTQCQAIHARSIFPCQDTPAARIRYDVVMNIPNSLSAVMSA 166


>At4g33090.1 68417.m04715 aminopeptidase M similar to SP|Q11011
           Puromycin-sensitive aminopeptidase (EC 3.4.11.-) (PSA)
           {Mus musculus}; contains Pfam profile PF01433: Peptidase
           family M1
          Length = 879

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 36/162 (22%), Positives = 66/162 (40%), Gaps = 6/162 (3%)
 Frame = +1

Query: 208 PEQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIE--SIELDGAQL 381
           P+ AV K   L LN D       G+  +D+D++ D   +VL++++L++   S+       
Sbjct: 11  PKFAVPKRYDLRLNPDLIACTFTGTVAIDLDIVADTRFIVLNAADLSVNDASVSFTPPSS 70

Query: 382 TYKLDDP---VPNYGSKLTIQLPKRASSG-DKLKIKIKYTTSPSATALQWLQPAQTSGKK 549
           +  L  P   +      L ++  +    G   LK+      +       +    + +G+K
Sbjct: 71  SKALAAPKVVLFEEDEILVLEFGEILPHGVGVLKLGFNGVLNDKMKGF-YRSTYEHNGEK 129

Query: 550 HPYLFSQCQPIHARSILPCQDTPFVKFTYDAEVTAPEEFTVL 675
                +Q +P  AR   PC D P  K T+   +  P +   L
Sbjct: 130 KNMAVTQFEPADARRCFPCWDEPACKATFKITLEVPTDLVAL 171


>At1g73960.1 68414.m08565 expressed protein similar to TATA binding
           protein associated factor (GI:2827282) [Homo sapiens];
           similar to Transcription initiation factor TFIID 150 kDa
           subunit (TAFII-150) (TAFII150) (Swiss-Prot:Q24325)
           [Drosophila melanogaster]
          Length = 1390

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 21/58 (36%), Positives = 33/58 (56%)
 Frame = +1

Query: 217 AVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYK 390
           A + H  L L++DF+ + + G   L+V V  DIG V L +  L IES+ +DG    ++
Sbjct: 23  AKVLHQKLFLSIDFKKRQIYGYTELEVSV-PDIGIVGLHAENLGIESVLVDGEPTVFE 79


>At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative
           (CHX19) similar to putative Na+/H+-exchanging protein
           GB:CAA23036 from [Arabidopsis thaliana]; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 857

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -2

Query: 463 YHHLRLVSAIV*SIWSHSSALGHLICTSIEHRLVLLILLSVHSNQ 329
           Y HLR V+    +  S  S++   ICTS   + V +ILL  H +Q
Sbjct: 588 YQHLRAVAVRPMTAISGLSSIHEDICTSAHQKRVAMILLPFHKHQ 632


>At1g50570.1 68414.m05675 C2 domain-containing protein low
           similarity to cold-regulated gene SRC2 [Glycine max]
           GI:2055230; contains Pfam profile PF00168: C2 domain
          Length = 388

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 29/82 (35%), Positives = 41/82 (50%)
 Frame = +1

Query: 211 EQAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYK 390
           E+AV+K V L++N++ E KV          V QDI D+   S +   ES  L   +L   
Sbjct: 310 EEAVVKPV-LTVNIEPEQKV----------VQQDIVDMYTKSLQQFTES--LAKMKLPLD 356

Query: 391 LDDPVPNYGSKLTIQLPKRASS 456
           +D P  +  S  + Q PK ASS
Sbjct: 357 IDSPTQSENSSSSQQTPKSASS 378


>At4g10710.1 68417.m01751 transcriptional regulator-related similar
           to chromatin-specific transcription elongation factor
           FACT 140 kDa subunit (GI:5499741) [Homo sapiens]
          Length = 1074

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +2

Query: 125 TQNKQGHASVKFQSWVLSVLWIRLPFRGLNKL 220
           TQ K   A  KF+   LS LWIR PF G  K+
Sbjct: 664 TQEKLQLAGNKFKPLRLSELWIRPPFSGRKKI 695


>At3g10740.1 68416.m01293 glycosyl hydrolase family protein 51
           similar to arabinoxylan arabinofuranohydrolase isoenzyme
           AXAH-II from GI:13398414 [Hordeum vulgare]
          Length = 678

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/103 (20%), Positives = 48/103 (46%)
 Frame = +1

Query: 34  FRNKIAFFVPVRLINWKHSKVRHSLINFGLHTKQTRSRFSQVPVMGAFSPLDPSSFSRPE 213
           ++N    ++ ++ +N+  +     ++  GL     R   S+  V+ + + +D +SFS+PE
Sbjct: 566 WKNNGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPE 625

Query: 214 QAVIKHVTLSLNVDFENKVLNGSATLDVDVLQDIGDVVLDSSE 342
           + V     L L  +    VL   +    D+L++   + +  S+
Sbjct: 626 KVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISD 668


>At3g43540.2 68416.m04623 expressed protein hypothetical protein
           slr1699 - Synechocystis sp. (strain PCC 6803),
           PIR:S75306
          Length = 301

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +1

Query: 274 NGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKRAS 453
           N  A  + D+L++     ++S   T+E + L+G  LT  + DP    G   T+  P  A 
Sbjct: 217 NSDAIDETDLLEETLRPRIESIGGTLEKVRLNGNHLTPCIQDPKWQIG---TVYTPADAV 273

Query: 454 SGDKLKIKIKYTTSPSATALQWLQ 525
           +     I +  T   S T + W +
Sbjct: 274 AQALKTIPLSETRVLSRTIVDWFR 297


>At3g43540.1 68416.m04622 expressed protein hypothetical protein
           slr1699 - Synechocystis sp. (strain PCC 6803),
           PIR:S75306
          Length = 373

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/84 (26%), Positives = 37/84 (44%)
 Frame = +1

Query: 274 NGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTYKLDDPVPNYGSKLTIQLPKRAS 453
           N  A  + D+L++     ++S   T+E + L+G  LT  + DP    G   T+  P  A 
Sbjct: 289 NSDAIDETDLLEETLRPRIESIGGTLEKVRLNGNHLTPCIQDPKWQIG---TVYTPADAV 345

Query: 454 SGDKLKIKIKYTTSPSATALQWLQ 525
           +     I +  T   S T + W +
Sbjct: 346 AQALKTIPLSETRVLSRTIVDWFR 369


>At1g74400.1 68414.m08619 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 domain of unknown
           function
          Length = 462

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 524 CNHCNAVADGDVVY--LILIFNLSPLEARFGNCIVNL 420
           C+H   V +G   +  +I+ +NL P EA FG C+V+L
Sbjct: 286 CSHSGLVEEGKRHFKSMIMDYNLKPREAHFG-CMVDL 321


>At1g78540.1 68414.m09154 transcription factor-related weak
           similarity to STAT protein (GI:2230824) and STATc
           protein (GI:13235235) [Dictyostelium discoideum]
          Length = 638

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +1

Query: 442 KRASSGDKLKIKIKYTTSPSATALQWLQPAQTSGKKHPYLFSQCQPIHARSILP 603
           K  +     K+KI   +S S   L W++    + K +P+L +   PI   S+ P
Sbjct: 278 KLLNGRSSFKLKISQLSSNSDDRLFWIKFGIRNAKDYPFLQAVSNPIRCISVSP 331


>At1g60080.1 68414.m06769 3' exoribonuclease family domain
           1-containing protein similar to SP|Q96B26 Exosome
           complex exonuclease RRP43 (EC 3.1.13.-) (Ribosomal RNA
           processing protein 43) {Homo sapiens}; contains Pfam
           profile PF01138: 3' exoribonuclease family, domain 1
          Length = 302

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 223 IKHVTLSLN-VDFENKVLNGSATLDVDVLQDIGDVVLDSSELTIESIELDGAQLTY 387
           +K++  SL  +  +N +L    T +  ++  +  VVLDSS+  +   +  GA L Y
Sbjct: 219 LKNIPFSLTCILHKNYILADPTTEEESIMDTLVTVVLDSSDQMVSFYKSGGAALAY 274


>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 898

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 247 NVDFENKVLNGSATLDVDVLQDIGDVVLDSSELT 348
           ++DF N  LNG+ T D+  L  +  + L ++ LT
Sbjct: 434 SIDFSNFGLNGTITSDIQYLNQLQKLDLSNNNLT 467


>At2g19830.1 68415.m02319 SNF7 family protein contains Pfam domain,
           PF03357: SNF7 family
          Length = 213

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 7/99 (7%)
 Frame = +1

Query: 133 QTRSRFSQVPVMGAFSPLDPSSFSRPEQAVIKHVTLSLNVDFENKVLN--GSATLDVDVL 306
           Q R     + + GA +  +     R   + +K +  + N+D  +K ++     T ++  +
Sbjct: 81  QLRIHDQMIMLEGAKATTETVDALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQI 140

Query: 307 QD-----IGDVVLDSSELTIESIELDGAQLTYKLDDPVP 408
           Q+      G    D  EL  E  EL+GA+L  +L  PVP
Sbjct: 141 QEALSAPFGANDFDEDELEAELDELEGAELEEQLLQPVP 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,538
Number of Sequences: 28952
Number of extensions: 268264
Number of successful extensions: 770
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)