Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30145
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical...    27   9.8  

>AL161712-16|CAC35892.1|  329|Caenorhabditis elegans Hypothetical
           protein Y66D12A.21 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 4/95 (4%)
 Frame = -3

Query: 404 QKKSAKSFYSNNYM*TKPTKLNLYLISLRIHAIFKVQSNYIVI*EFRKI----FFLRSKE 237
           +K + K F + N    K  K +LY+ + R   IF  +  + V    RKI    FF R K 
Sbjct: 225 EKLNKKDFLNENCK--KLNKNDLYVENSRRLYIFSGKFEFSVPKSSRKISIFLFFFRRKS 282

Query: 236 KWNERKYRNVNTK*ITYVRLIKIHNITTFFFNTKH 132
           K  E+K +N       +    K   I  FF    H
Sbjct: 283 KNREKKLKNHRKSIEIHFFFQKFFQIFIFFTFDSH 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,174,339
Number of Sequences: 27780
Number of extensions: 226144
Number of successful extensions: 343
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)