Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30144
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   3.4  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   4.5  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 37  HHHHGMLQHQNLTHRLRPT 93
           HHHH     Q+L +R  PT
Sbjct: 353 HHHHQTQSLQHLHYRQPPT 371


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 474 KLINEEPKGTINDEVTPAVNEV 539
           K+I  +PKG+I D  + + NEV
Sbjct: 235 KIIAVDPKGSILDPSSDSQNEV 256


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 474 KLINEEPKGTINDEVTPAVNEVSSGPSTIVAAPAVVVNDVIESPT 608
           K+I E+ K   N  +TPAVN +  G    VA     + D+ ++ T
Sbjct: 462 KIIEEKRKNK-NKNLTPAVNIIVKGD---VAGSVEALLDIFDTYT 502


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,253
Number of Sequences: 438
Number of extensions: 2816
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)