Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30143
(520 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43) 55 4e-08
SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 9e-08
SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39) 31 0.75
SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.00
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11) 29 3.0
SB_14110| Best HMM Match : DUF858 (HMM E-Value=2) 28 5.3
SB_20302| Best HMM Match : ClpS (HMM E-Value=0.091) 27 9.3
>SB_7616| Best HMM Match : NAD_binding_2 (HMM E-Value=2.00386e-43)
Length = 270
Score = 54.8 bits (126), Expect = 4e-08
Identities = 42/122 (34%), Positives = 63/122 (51%)
Frame = +1
Query: 154 MGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXXXXXXXXSILTSNKVV 333
MG MA NL+ +G+ V +D ++++ + G A + + +NK+V
Sbjct: 1 MGSPMAKNLLDQGYGVVVHDIFPESVDDLRQLGAGVAET---------PDEVAMKTNKIV 51
Query: 334 LDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGFTDAPVSGGVMGAQNA 513
L V + G+LLID STIDP + K+I +A EKG + DAPVSGG+ A+
Sbjct: 52 --TMLPSSSV----QDGTLLIDCSTIDPALSKEISEMASEKGATYLDAPVSGGITAAKAG 105
Query: 514 TL 519
TL
Sbjct: 106 TL 107
>SB_43094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 53.6 bits (123), Expect = 9e-08
Identities = 35/128 (27%), Positives = 61/128 (47%)
Frame = +1
Query: 109 SSNTDKNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKNGVTPANSIXXXXX 288
+S + + V +G GN+G +A L K +V+ +D ++ N G T NS
Sbjct: 3 TSASPRTVGLVGTGNVGSAVAVGLRKIDVSVKAFDLQQNNYNFLESTGTTLVNSPEEVTK 62
Query: 289 XXXXXXSILTSNKVVLDVYLGKDGVVAHAKKGSLLIDSSTIDPNVPKQIFPIALEKGLGF 468
+ L + V L G+++ K+GS+ ID +T D N ++ +A KG+
Sbjct: 63 DVDVLITALPKPQHVKSA-LEDTGMLSMLKEGSVWIDHTTTDYNETIRLGELATSKGVHA 121
Query: 469 TDAPVSGG 492
+AP++GG
Sbjct: 122 VEAPLTGG 129
>SB_31364| Best HMM Match : 2-Hacid_dh_C (HMM E-Value=1.5e-39)
Length = 401
Score = 30.7 bits (66), Expect = 0.75
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 124 KNVAFLGLGNMGGFMAANLVKKGFTVRGYDPSKDALNAAAKN 249
K +A +GLG +G +A + G GYDP +AA N
Sbjct: 9 KTLAIIGLGRIGREVALRMQSYGVKTIGYDPLVSPQDAAESN 50
>SB_7271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 30.3 bits (65), Expect = 1.00
Identities = 8/33 (24%), Positives = 15/33 (45%)
Frame = +2
Query: 131 WLSSASETWEDSWLRTWLKRVSQFAATILPKMH 229
W+ + W D W+ W+ + A + P +H
Sbjct: 28 WMDGWMDGWMDGWMDGWMDVIDVLCAVLFPDLH 60
>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 388
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 444 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 298
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 250 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 298
>SB_45666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 28.7 bits (61), Expect = 3.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 47 KWPRAQY*ALSVCTQPPDGRIVLTPTRMWLSSASETW 157
KW Q S+C + P+ +I + R +LS++S+ W
Sbjct: 3 KWSGNQVLGQSLCLRGPEQKIASSCVRAFLSTSSDDW 39
>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
Length = 1903
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 444 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 298
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 306 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 354
Score = 28.7 bits (61), Expect = 3.0
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -2
Query: 444 YREDLFGNIRIYRTRIDQKRSFFRMSHNAIFAQVHVEHDFIAGQYGNDH 298
Y ++ N Y D S + H+ ++ EHD +YG+DH
Sbjct: 698 YEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYEQEHDTNTSRYGHDH 746
>SB_14110| Best HMM Match : DUF858 (HMM E-Value=2)
Length = 207
Score = 27.9 bits (59), Expect = 5.3
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 SSNTDKNVAFLGLGNMGGFMAANLVKKGFT-VRGYDPSKDALNAAAKNGV 255
S ++ L +G+ G A LVK GFT + DPS+ + A K +
Sbjct: 61 SQGFSEDCRILDVGSGTGLQAEGLVKHGFTNIDALDPSEKSHEVARKKNL 110
>SB_20302| Best HMM Match : ClpS (HMM E-Value=0.091)
Length = 155
Score = 27.1 bits (57), Expect = 9.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -3
Query: 203 RTVKPFLTKFAAMNPP 156
R V+PFLTKF ++ PP
Sbjct: 85 RVVRPFLTKFFSLMPP 100
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.132 0.373
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,337,067
Number of Sequences: 59808
Number of extensions: 413487
Number of successful extensions: 1309
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1303
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -