Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30142
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p...   130   2e-31
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    31   0.21 
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    28   1.1  
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar...    27   2.6  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   4.5  
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   4.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.5  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    26   5.9  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   5.9  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    26   5.9  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   7.8  

>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 227

 Score =  130 bits (314), Expect = 2e-31
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 1/222 (0%)
 Frame = +2

Query: 2   SDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXX 181
           SD  VQ ++  M++FI+Q                F +EK ++V++Q   I          
Sbjct: 4   SDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLKR 63

Query: 182 XXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYPELLVTLIVQA 361
                 I  SN+LN++RL++L  ++  + ++     K+L  + +    Y + +  LIVQA
Sbjct: 64  ASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQA 123

Query: 362 LFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSPDTCGGIE 538
           +  L EP   +  RQ D  +V++ + KA    K+K    D  L  +T++FL+    GG+ 
Sbjct: 124 MELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGVV 183

Query: 539 LVAARGRIKISNTLESRLELIAQQLLPEIRNALFGRNPNRKF 664
           LV   G+I++ NTL +RLE++ ++ LPEIR  LFG NPNRKF
Sbjct: 184 LVGLGGKIRVDNTLRARLEIVKEEALPEIRRLLFGENPNRKF 225


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -1

Query: 527 HRCRATKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 408
           H  R  +SS + RLS +H   S++C +      G P  PCR
Sbjct: 77  HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +2

Query: 407  TDKALVESLLGKAQTDYKNKIKKDVVLKVDTENF--LSPDTCGGIELVAARGRIKISNTL 580
            TD+   ++ + K + D  +  K+DV+ K+D       S    G +E    +G +K S   
Sbjct: 1861 TDQTAADNKVTKPRLDESSSSKQDVLNKIDESEIEQASSKKPGYVEKNKDKGHMKKSKKP 1920

Query: 581  ESRLELIA 604
            +S+L L A
Sbjct: 1921 KSKLALAA 1928


>SPBC215.10 |||haloacid dehalogenase-like
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 257 DHVRNVLDEARKRLAEVPKDTKLYPELLVTLIVQALFQLMEP 382
           D   N L+EA+KRLA +P D     E+ +T  +   F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 374 MEPTVTIRVR-----QTDKALVESLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 526
           +E T+TI V        DK   E+ LGK   D  N  + DV+  V  E   + D C
Sbjct: 782 IENTLTIPVEVEHSDNIDKGSEENDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837


>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 583 LQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLIL 458
           LQ V+ +  SP    L     VG+ +V+  DF    LLDL L
Sbjct: 223 LQHVSHISISPNARYLALYESVGKVRVISSDFSKE-LLDLRL 263


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 460 LVVCLGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQLWVQFGV 314
           L+V     EQG    ++   D+  +SG HE+ + L N  DQQL  Q  +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -2

Query: 553 PGC-NQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGF 440
           PG  N LDS  G  R+K       H + + ++L++C G+
Sbjct: 22  PGTSNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 527  GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGRNPNRKFTD 670
            G + L  +R  I+  N   + L+L++QQ+   + NAL  ++  R  TD
Sbjct: 1562 GALYLCLSRRAIRTGNV--TFLKLLSQQIAISVSNALLFQSLRRTITD 1607


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -2

Query: 370 LEESLHNKCDQQLWVQFGVLWHFSQALASFVKYI 269
           L ++ H+  D   WV +GV+ + +  + SF+ +I
Sbjct: 137 LSKTTHSILDILAWVPYGVMHYSAPFIISFILFI 170


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +1

Query: 310 KGHQTVPRAAGHTYCAGSLPAHGTHCHHPRPS 405
           KG +  PR + +T  A   P   T  H P PS
Sbjct: 557 KGDEESPRVSRNTSLARRKPLPDTESHSPSPS 588


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,551,655
Number of Sequences: 5004
Number of extensions: 49801
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)