Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30142
(695 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 122 3e-28
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 109 2e-24
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 99 3e-21
03_04_0095 + 17266595-17266741,17267235-17267807 33 0.29
09_02_0115 + 4413714-4414475 30 1.5
11_05_0100 - 19056465-19056470,19057043-19057276,19058391-190585... 29 3.5
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 4.7
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 4.7
05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244... 29 4.7
12_02_0312 + 17395716-17398112 28 6.2
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 6.2
08_01_0306 - 2570411-2570419,2570809-2570886,2571464-2571671,257... 28 6.2
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 6.2
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 122 bits (294), Expect = 3e-28
Identities = 79/226 (34%), Positives = 120/226 (53%), Gaps = 11/226 (4%)
Frame = +2
Query: 2 SDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXX 181
+DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 2 NDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEKQ 61
Query: 182 XXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYPELLVTLIVQA 361
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 62 VEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQG 121
Query: 362 LFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFLSPDT----- 523
L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L P
Sbjct: 122 LLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPPSPSSHDS 181
Query: 524 ----C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 646
C GG+ L + G+I NTL++RLE++ ++ LPEIR LFG+
Sbjct: 182 HERFCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPEIRKLLFGQ 227
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 109 bits (263), Expect = 2e-24
Identities = 78/237 (32%), Positives = 121/237 (51%), Gaps = 22/237 (9%)
Frame = +2
Query: 2 SDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXX 181
+DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 2 NDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAKQ 61
Query: 182 XXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYPELLVTLIV-- 355
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 62 VDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQR 121
Query: 356 ---------QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTEN 505
Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K ++ + +D +
Sbjct: 122 KDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGKV 181
Query: 506 FLSPDT---------C-GGIELVAARGRIKISNTLESRLELIAQQLLPEIRNALFGR 646
+L P C GG+ + + G+I NTL++R+E+ +Q LPEIR LF +
Sbjct: 182 YLPPPKTARDAHGPFCSGGVVIASQDGKIVCDNTLDARVEISFKQKLPEIRKKLFSQ 238
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 99.1 bits (236), Expect = 3e-21
Identities = 69/228 (30%), Positives = 113/228 (49%), Gaps = 21/228 (9%)
Frame = +2
Query: 2 SDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXXX 181
+D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 3 NDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEKQ 62
Query: 182 XXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYPELLVTLIVQ- 358
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 63 GDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQD 122
Query: 359 ---------ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNK---------IKKDVV 484
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + ++V
Sbjct: 123 KLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNVY 182
Query: 485 LKVDTENFLS--PDTCGGIELVAARGRIKISNTLESRLELIAQQLLPE 622
L ++ + P GG+ L + G+I NTL++RLE++ ++ LPE
Sbjct: 183 LPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTLDARLEVVFRKKLPE 230
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 32.7 bits (71), Expect = 0.29
Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Frame = +1
Query: 304 SAKGHQTVPRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLQE*DQEGCC 483
S++ +P A C G + HG H R ++ GV P + + + C
Sbjct: 134 SSRRRWRIPAAGVGCSCVG-VRLHGRRHPHRREAHGGSGSGVFIGGGPREVAQGETSSCA 192
Query: 484 VE-----SRHRELFVARHLWWNRAG-CSQG--TYQDQQHSGVSLGADR 603
+ R RE RHLWW R G +G + +Q S G DR
Sbjct: 193 RQHLLDGQRRRE--PKRHLWWQRGGEVRRGGSGARGRQESAAQQGRDR 238
>09_02_0115 + 4413714-4414475
Length = 253
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 331 RAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 426
R H+ + SLP H HHPRP +GS G
Sbjct: 21 RLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>11_05_0100 -
19056465-19056470,19057043-19057276,19058391-19058546,
19059639-19059763,19059912-19059983,19060080-19060184,
19060691-19060745,19061576-19061656,19062806-19062869,
19064715-19064782,19064947-19065033,19066121-19066285,
19066310-19066429,19066485-19066607,19066738-19067019,
19067936-19068075,19068234-19068335,19068802-19068874,
19069061-19069171
Length = 722
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -3
Query: 684 SPLN*SVNLRLGLRPKRALRISGSSCWAISSKRDSRVLLILIRPLAATSSI--PPQVSGD 511
S +N S + G+ + I S C A+ SK D +LIL P+A + ++ P ++ G
Sbjct: 321 SAVNGSSHEGNGMNDNSKILIDNSCCLALYSKLDEDQVLILQSPVALSKAVKNPVELDGL 380
Query: 510 KK 505
+K
Sbjct: 381 RK 382
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 227 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYPELLVTLIVQA 361
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 346 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 447
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>05_06_0238 -
26621843-26622457,26622625-26623375,26624372-26624418,
26624632-26624740,26624969-26625050,26625164-26625248,
26625320-26625439,26625735-26625800,26625994-26626041,
26626148-26626196,26626576-26626613
Length = 669
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -2
Query: 601 DQLQARLQSVADLDTSPGCNQLDSTTGVGRQKVLGVDFQHNILLDLI 461
++L+ + DL GC+ DS G+G Q L + QH + ++
Sbjct: 110 EELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESIL 156
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 200 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYPELLV 343
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 367 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 456
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>08_01_0306 -
2570411-2570419,2570809-2570886,2571464-2571671,
2573400-2573521,2573815-2573883,2573963-2574052,
2574113-2574230,2574956-2575086,2575195-2575464,
2577323-2577433,2577604-2578152
Length = 584
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 307 AKGHQTVPRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 447
+K +T P A+G A + HPR S+ G GG RK+P
Sbjct: 28 SKSSETSPAASGRWTRARARDLGFDTTDHPRVSDSAGGGGRTDRKAP 74
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 346 TYCAGSLPAHGTHCHHPRPSNRQGSGG 426
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,092,406
Number of Sequences: 37544
Number of extensions: 393825
Number of successful extensions: 1280
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1273
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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