Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30142
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)           50   1e-08
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    32   0.51 
SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)                30   2.1  
SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)           29   4.8  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  

>SB_52835| Best HMM Match : vATP-synt_E (HMM E-Value=2.1e-05)
          Length = 288

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 25/61 (40%), Positives = 38/61 (62%)
 Frame = +2

Query: 245 KVREDHVRNVLDEARKRLAEVPKDTKLYPELLVTLIVQALFQLMEPTVTIRVRQTDKALV 424
           K  E   + +LDEA +RL +V +D   Y +++  LI Q L+QL+E  V IR R+ D +LV
Sbjct: 68  KAEEIDAKRILDEAVERLGKVTQDQGKYQQIIQGLITQGLYQLLESKVLIRCRKQDVSLV 127

Query: 425 E 427
           +
Sbjct: 128 K 128



 Score = 41.1 bits (92), Expect(2) = 1e-08
 Identities = 18/28 (64%), Positives = 24/28 (85%)
 Frame = +2

Query: 527 GGIELVAARGRIKISNTLESRLELIAQQ 610
           GGIEL A +G+IK+ NTLESRLE++ +Q
Sbjct: 234 GGIELHAKQGKIKVVNTLESRLEMLGRQ 261



 Score = 35.9 bits (79), Expect(2) = 1e-08
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 428 SLLGKAQTDYKNKIKKDVVLKVDTENFLSPD 520
           ++ G A  +YK + KK++ L VD +NFL PD
Sbjct: 173 AVFGPATEEYKKQTKKEIELTVDEQNFLGPD 203


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 230 RLKVLKVREDHVRNVLDEARKRLAEV 307
           R+  LK +ED ++N+LDE R +  EV
Sbjct: 147 RINTLKTKEDEIKNILDEQRGKAEEV 172


>SB_57508| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1215

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 452 DYKNKI-KKDVVLKVDTENFLSPDTCGGIELVAARGRIKISNTLES 586
           DY N+I   D+V++ D  N L PD+ G IEL   R  +  SN ++S
Sbjct: 47  DYGNRIIGLDLVVRNDDGNILDPDSTGVIELY--RRHLSTSNKIQS 90


>SB_57632| Best HMM Match : Fibrinogen_C (HMM E-Value=8)
          Length = 214

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -1

Query: 275 VHYVRDLHELSVP-----SDELGSACSKIGSSSEVQPASPSFHSIP*S*DVAAGQDGP 117
           ++Y++D H    P     + E G A + + S S    A P F SIP   D +  +DGP
Sbjct: 19  LYYLQDTHHNWYPVYCDFTSEAGKAWTLVLSFSYANHAKPEFFSIPFLDDGSLSEDGP 76


>SB_5418| Best HMM Match : Spectrin (HMM E-Value=1.50001e-40)
          Length = 514

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 257 DHVRNVLDEARKRLAEVPK-DTKLYPELLVTLIVQALFQLMEPTVTIRVRQTDKALVESL 433
           D V   L+E   R  E+    T    +L   L+    FQL    + + +RQTD  L E L
Sbjct: 164 DLVHAQLEEVNHRWDELCNHSTGRQQKLEEALLQLGQFQLAFQELLVWLRQTDSTLDEQL 223

Query: 434 LGKAQTDYK 460
             K Q D K
Sbjct: 224 AKKVQGDVK 232


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 233  LKVLKVREDHVRNVLDEARKRLAEVPKDTKLYPELLV 343
            LK+LK R  H RN   EA+++  E  ++TK++ ++ +
Sbjct: 2941 LKILKERRMHARN---EAKRQAIEKERETKIHRKIAI 2974


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,962,058
Number of Sequences: 59808
Number of extensions: 408590
Number of successful extensions: 1273
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)