Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30141
(717 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36) 117 1e-26
SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06) 30 2.2
SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5) 30 2.2
SB_13226| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_34303| Best HMM Match : Pkinase (HMM E-Value=0) 29 5.0
SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45) 29 5.0
SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
>SB_55174| Best HMM Match : AP_endonuc_2 (HMM E-Value=2.4e-36)
Length = 260
Score = 117 bits (281), Expect = 1e-26
Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 2/237 (0%)
Frame = +3
Query: 12 MKFCANLSFMFAEASSILERYALAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAIN 191
MK ANLS +F E ++ER A AGF VE FP+ +++ A ++AG+ IN
Sbjct: 1 MKIAANLSLLFTELP-LIERVVAAAAAGFDGVEIQFPYELPAIRLKEALEAAGMPLRLIN 59
Query: 192 LKTGDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKV-ENPTPKH-WE 365
L GD G G+ ++P ++ EF L + YA + ++++ G++ + P+
Sbjct: 60 LPAGDLMSGGPGLAAMPARQAEFDLALKDALSYAAMVRPALVNVLPGRLADGVEPEQALA 119
Query: 366 TFEKNLLYAVDVLKGENIQGLIEPINQYSMPKYFLSDYGRAVDIIKRIDSPNLRLMLDIF 545
NL + + I ++E IN +P + ++ + ++K + PNL D++
Sbjct: 120 CLVDNLHKTAEAFQLLGIGVVVEAINPLDIPGFLINTPEQLDALLKAVAHPNLAAQYDLY 179
Query: 546 HLQQIAGDITHNITKLLPYIGHVQIAQVPNRNEPDTPGEINYKYVLEHLAKSGYDEW 716
H+ + D+ I L IGHVQ A P R P T GE+ + +L L SGY W
Sbjct: 180 HMARQGLDVQAGIVLLAGRIGHVQFADYPGRGAPGT-GELQFAPLLTALRDSGYQGW 235
>SB_59052| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Frame = +3
Query: 228 VTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWET---FEKNLLYAVD 398
+ SV E+ ++ +L+ +++ +KA ++ + +M GK +PT + W+T F N L+ +
Sbjct: 84 ILSVRDNEEIWRKSLDKSLQVSKA-SSRSLWMMVGKQISPTGRKWKTIQDFISNTLFLKN 142
Query: 399 VLKGENI 419
K NI
Sbjct: 143 TDKDSNI 149
>SB_50102| Best HMM Match : Phage_fiber (HMM E-Value=8.2e-06)
Length = 274
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/49 (38%), Positives = 25/49 (51%)
Frame = -2
Query: 614 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 468
H S++W N N S LL N H S++WT N H+SS+ TQ
Sbjct: 17 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSRLWTQG--NTTHNSSLWTQ 60
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -2
Query: 614 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 468
H S++W N N S LL N H S +WT N H+SS+ TQ
Sbjct: 174 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 217
>SB_23440| Best HMM Match : BAT2_N (HMM E-Value=7.5)
Length = 262
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +3
Query: 546 HLQQIAGDITHNITKLLPYIG---HVQIAQVPNRNEPDT 653
H QQ+A +IT+N K P IG H Q AQ N P T
Sbjct: 210 HHQQLAQNITNNRPKTSPTIGPKHHQQSAQNNTNNRPKT 248
>SB_13226| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Frame = -2
Query: 668 VYLSGRVRLVTIRNLSYLHMSNVWQ-*FRNIMSNVASDLLKMKNVQH-QSQIWTVNTFN 498
VY+ G VRL T +L + +W+ ++ I+ V + + +KN H + ++ TVN +N
Sbjct: 17 VYIDGGVRLGTDARSVFLGRTVIWELAYKRIVFEVPGN-ITVKNAMHCEQKVVTVNDYN 74
>SB_14151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -2
Query: 614 HMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSIITQ 468
H S++W N N S LL N H S +WT N H+SS+ TQ
Sbjct: 141 HNSSLWT-QGNTTHN--SSLLTQGNTTHNSSLWTQG--NTTHNSSLWTQ 184
>SB_34303| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 226
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Frame = +3
Query: 483 RAVDIIKRIDS---PNLRLMLDIFHLQQIAGDITH 578
R + ++K+ID+ PN+ +LDIFH+ + TH
Sbjct: 52 REIALLKQIDNFAHPNVVRLLDIFHIPMLTARETH 86
>SB_33304| Best HMM Match : RNA_pol_Rpb1_1 (HMM E-Value=7.00649e-45)
Length = 638
Score = 28.7 bits (61), Expect = 5.0
Identities = 15/67 (22%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +3
Query: 468 LSDYGRAVDII--KRIDSPNLRLMLDIFHLQQIAGDITHNITKLLPYIGHVQIAQVPNRN 641
++ G AV +I + I P +L L FH+ +AG ++ + + + G +++ +
Sbjct: 508 MTQKGEAVGVIAAQSIGEPGTQLTLRTFHVGGVAGGLSEESSIITKFKGRLEVEDLKTVK 567
Query: 642 EPDTPGE 662
D G+
Sbjct: 568 GEDADGK 574
>SB_36973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 560 DLLKMKNVQHQSQI-WTVNTFNNVHSSSIITQEIFGHRILVDWFD 429
D++ +N Q + NTFN+ S + + IFGH DW +
Sbjct: 153 DMMMSRNPQQMQNLDHAANTFNDCQSHTYQSNTIFGH---ADWME 194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,247,952
Number of Sequences: 59808
Number of extensions: 429820
Number of successful extensions: 1245
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1241
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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