Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30141
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10080.1 68417.m01649 expressed protein                             31   0.76 
At5g50780.1 68418.m06291 ATP-binding region, ATPase-like domain-...    30   1.8  
At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR ...    30   1.8  
At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam profi...    29   3.1  
At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical ...    28   5.4  
At2g16860.1 68415.m01939 GCIP-interacting family protein similar...    28   7.1  
At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to ...    28   7.1  
At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 compone...    27   9.4  
At4g10650.1 68417.m01739 GTP-binding family protein contains Pfa...    27   9.4  

>At4g10080.1 68417.m01649 expressed protein
          Length = 325

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 37/145 (25%), Positives = 64/145 (44%), Gaps = 10/145 (6%)
 Frame = +3

Query: 48  EASSILERYALAKD---AGFKAVESGFPFGFSLE---QVRNAKQ---SAGLQQIAINLKT 200
           E+SS+++   +  D   A  + +ESG+   F ++   +  N  +    +GL Q +++   
Sbjct: 26  ESSSVIDDGMILSDHFSATDRVIESGYFDSFRVDYGSECLNPGEVSVDSGLDQFSVSQSG 85

Query: 201 GDTTKGEVGVTSVPGKEDEFKTNLNTTIEYAKALDAKKIHIMAG-KVENPTPKHWETFEK 377
            D  + E GV      E     +    +   +A + K +   A  ++   T  H+ET  +
Sbjct: 86  DDCVRNEFGVYD---SETGILGDGEVRLSDFEAANEKYVESEAATELTGGTVSHYET--E 140

Query: 378 NLLYAVDVLKGENIQGLIEPINQYS 452
           NL   VD   GEN  G+ EPI   S
Sbjct: 141 NLEEFVDGRHGENESGVEEPIEDSS 165


>At5g50780.1 68418.m06291 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Homo sapiens] GI:5410257; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 823

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +3

Query: 78  LAKDAGFKAVESGFPFGFSLEQVRNAKQSAGLQQIAINLKTGD---TTKGEVGVTSVPGK 248
           ++KD G+K+ E G   G S  +     +  G + + +     D    +  E  VT +PGK
Sbjct: 647 VSKDIGYKSSEKGGKLGNSFSKSNKRAKPQGARAVEVTNSDDDYDCDSSPERNVTELPGK 706

Query: 249 EDE 257
             E
Sbjct: 707 SSE 709


>At4g10780.1 68417.m01758 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 892

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 653 RVRLVTIRNLSYLHMSNVWQ*FRNIMSNVASDLLKMKNVQHQSQIWTVNTFNNVHSSSII 474
           RV++   + L  L    VW     I+ N   DLL  +N++ Q   +  N   N+ SS   
Sbjct: 56  RVQMEEGKGLERLQQVQVWLKRVEIIRNQFYDLLSARNIEIQRLCFYSNCSTNLSSSYTY 115

Query: 473 TQEIF 459
            Q +F
Sbjct: 116 GQRVF 120


>At2g38020.1 68415.m04667 vacuoleless1 (VCL1) contains Pfam
           profiles: PF04841 Vps16, N-terminal region, PF04840:
           Vps16, C-terminal region; identical to cDNA VCL1 (VCL1)
           GI:13877132
          Length = 858

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +2

Query: 587 EIIAIHWTCANSSGSES*RAGHARR---DKLQIC 679
           E++ +HW CA  + S S    H      DKLQ+C
Sbjct: 492 EVVIMHWACAKITASPSTPDSHLLEILLDKLQLC 525


>At5g05410.1 68418.m00583 DRE-binding protein (DREB2A) identical to
           DREB2A GI:3738230 from [Arabidopsis thaliana] ;
           supported by cDNA:gi_3738229_dbj_AB007790.1_AB007790
          Length = 335

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = +3

Query: 354 KHW-ETFEKNLLYAVDVLKG---ENIQGLIEPINQYSMPKYFLSDYGRAVDIIK-RIDSP 518
           KHW   FE N  Y  D+LK    +  QG++E   Q       ++DYG   D+ +  +DS 
Sbjct: 199 KHWLSEFEHN--YWSDILKEKEKQKEQGIVETCQQQQQDSLSVADYGWPNDVDQSHLDSS 256

Query: 519 NL 524
           ++
Sbjct: 257 DM 258


>At2g16860.1 68415.m01939 GCIP-interacting family protein similar to
           GCIP-interacting protein mp29 (GI:27372623) [Mus
           musculus]; similar to GCIP-interacting protein P29
           (GI:11967379) [Homo sapiens]
          Length = 298

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 339 ENPTPKHWETFEKNLLYAVDVLKGENIQGLIEPINQ 446
           + PTP  W+ F +  LY     + +NIQ  +E  N+
Sbjct: 169 KEPTPAGWDVFNQKTLYNAYKKRTKNIQVDLEEYNR 204


>At1g37130.1 68414.m04639 nitrate reductase 2 (NR2) identical to
           SP|P11035 Nitrate reductase 2 (formerly EC 1.6.6.1)
           (NR2) {Arabidopsis thaliana}
          Length = 917

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
 Frame = +3

Query: 237 VPGKEDEFKTNLNTTIEYAKALDAKKIHIMAGKVENPTPKHWETFEKNLLYAVDVLKGEN 416
           VPG+ D  K + N T      L   K+H     V +      ET   N +Y  ++++  N
Sbjct: 28  VPGRSDSPKAHQNQTTNQTVFLKPAKVHDDDEDVSSEDEN--ETHNSNAVYYKEMIRKSN 85

Query: 417 IQ---GLIEPINQYS 452
            +    +++P ++Y+
Sbjct: 86  AELEPSVLDPRDEYT 100


>At5g65750.1 68418.m08274 2-oxoglutarate dehydrogenase E1 component,
           putative / oxoglutarate decarboxylase, putative /
           alpha-ketoglutaric dehydrogenase, putative similar to
           SP|P20967 2-oxoglutarate dehydrogenase E1 component,
           mitochondrial precursor (EC 1.2.4.2)
           (Alpha-ketoglutarate dehydrogenase) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF02779:
           Transketolase, pyridine binding domain, PF00676:
           Dehydrogenase E1 component
          Length = 1025

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 285 EYAKALDAKKIHIMAGKVENPTPKHWETFEKNLLY 389
           EY    D  K + +  K+E PTP+ + +  + ++Y
Sbjct: 209 EYMHIADRDKCNWLRDKIETPTPRQYNSERRMVIY 243


>At4g10650.1 68417.m01739 GTP-binding family protein contains Pfam
           domain, PF01926: GTPase of unknown function
          Length = 332

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/27 (40%), Positives = 20/27 (74%)
 Frame = -2

Query: 98  KSSVFSQSISFQNGRSFSKHKRQISTE 18
           KS   ++S+S ++ +S +KHKRQ +T+
Sbjct: 237 KSQDLTESLSDESSKSDAKHKRQYATD 263


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,283
Number of Sequences: 28952
Number of extensions: 312006
Number of successful extensions: 883
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)