Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30139
         (690 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P48810 Cluster: Heterogeneous nuclear ribonucleoprotein...    46   7e-04
UniRef50_UPI00005A10B6 Cluster: PREDICTED: similar to Heterogene...    35   2.2  
UniRef50_P09651 Cluster: Heterogeneous nuclear ribonucleoprotein...    35   2.2  
UniRef50_Q5TTQ2 Cluster: ENSANGP00000026814; n=3; Endopterygota|...    34   2.9  
UniRef50_Q0C1S5 Cluster: Mandelate racemase/muconate lactonizing...    33   6.6  
UniRef50_Q6TMY6 Cluster: Putative voltage-gated cation channel s...    33   8.7  

>UniRef50_P48810 Cluster: Heterogeneous nuclear ribonucleoprotein
           87F; n=16; Coelomata|Rep: Heterogeneous nuclear
           ribonucleoprotein 87F - Drosophila melanogaster (Fruit
           fly)
          Length = 385

 Score = 46.4 bits (105), Expect = 7e-04
 Identities = 19/32 (59%), Positives = 21/32 (65%)
 Frame = +2

Query: 2   GNQDFGNYNQQSYSGGPTRNQAYGNNRSTPYN 97
           G   FGN  QQSY GGP RN  +GNNR  PY+
Sbjct: 312 GGGGFGNEYQQSYGGGPQRNSNFGNNRPAPYS 343


>UniRef50_UPI00005A10B6 Cluster: PREDICTED: similar to Heterogeneous
           nuclear ribonucleoprotein A1 (Helix-destabilizing
           protein) (Single-strand binding protein) (hnRNP core
           protein A1) (HDP-1) (Topoisomerase-inhibitor
           suppressed); n=4; Eutheria|Rep: PREDICTED: similar to
           Heterogeneous nuclear ribonucleoprotein A1
           (Helix-destabilizing protein) (Single-strand binding
           protein) (hnRNP core protein A1) (HDP-1)
           (Topoisomerase-inhibitor suppressed) - Canis familiaris
          Length = 407

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 11  DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
           DFGNYN QS + GP +   +G   S PY
Sbjct: 349 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 376


>UniRef50_P09651 Cluster: Heterogeneous nuclear ribonucleoprotein
           A1; n=390; Euteleostomi|Rep: Heterogeneous nuclear
           ribonucleoprotein A1 - Homo sapiens (Human)
          Length = 372

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 11  DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
           DFGNYN QS + GP +   +G   S PY
Sbjct: 314 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 341


>UniRef50_Q5TTQ2 Cluster: ENSANGP00000026814; n=3;
           Endopterygota|Rep: ENSANGP00000026814 - Anopheles
           gambiae str. PEST
          Length = 358

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 2   GNQDFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
           G  +FGN  QQ Y+ GP R     N R+ PY
Sbjct: 320 GGNEFGNNYQQGYNAGPVRAGGNFNQRAAPY 350


>UniRef50_Q0C1S5 Cluster: Mandelate racemase/muconate lactonizing
           enzyme family protein; n=4; Bacteria|Rep: Mandelate
           racemase/muconate lactonizing enzyme family protein -
           Hyphomonas neptunium (strain ATCC 15444)
          Length = 356

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 13/23 (56%), Positives = 18/23 (78%)
 Frame = -3

Query: 544 VWTMMSVSSAPERTAYTSTVNSA 476
           VW M+S+S  P RTA+T ++NSA
Sbjct: 120 VWDMLSISPDPVRTAFTISINSA 142


>UniRef50_Q6TMY6 Cluster: Putative voltage-gated cation channel
           subunit; n=2; Vibrio vulnificus|Rep: Putative
           voltage-gated cation channel subunit - Vibrio vulnificus
          Length = 259

 Score = 32.7 bits (71), Expect = 8.7
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 276 YISLDCLFLEHYIALIEYRKVPGCRFGV*LLVTIINAMQVVRSVSVLFHVTYNIFSISR- 452
           Y SL+     H ++  +Y + P C+F   LLV  + A+ +    SV++   + + S+ R 
Sbjct: 50  YFSLEFFLRVHVLSWKKYFQSPSCQFDFFLLVVSLVAIPISNIDSVIYLRVFRLISVIRV 109

Query: 453 FRAKYTSKAELTVLV*AVRS 512
           F+        L+ L  A++S
Sbjct: 110 FKIVPNGSQVLSGLARAIKS 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 561,694,282
Number of Sequences: 1657284
Number of extensions: 9112376
Number of successful extensions: 17397
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17392
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)