Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30139
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    31   0.16 
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ...    25   7.8  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 5   NQDFGNYNQQSYSGGPTRNQAYGNNRSTPYN 97
           N   GN N+Q+Y+     NQ YGNN +  YN
Sbjct: 602 NSSSGNSNKQNYNN--NNNQNYGNNNNQNYN 630



 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 8   QDFGNYNQQSYSGGPTRNQAYGNNRST 88
           Q++ N N Q+Y  G   NQ Y NN ++
Sbjct: 611 QNYNNNNNQNY--GNNNNQNYNNNNNS 635


>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 91  WSRPIIPICLISSWTPAI 38
           +S P  P+C I  WTP I
Sbjct: 105 FSYPENPLCFIKQWTPVI 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,412,522
Number of Sequences: 5004
Number of extensions: 40928
Number of successful extensions: 67
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)