Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30139
(690 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X79536-1|CAA56072.1| 320|Homo sapiens hnRNPcore protein A1 prot... 35 0.31
X12671-1|CAA31191.1| 320|Homo sapiens hnrnp a1 protein protein. 35 0.31
X06747-1|CAA29922.1| 320|Homo sapiens protein ( Human hnRNP cor... 35 0.31
X04347-1|CAA27874.1| 196|Homo sapiens protein ( Human liver mRN... 35 0.31
BC121133-1|AAI21134.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
BC104237-1|AAI04238.1| 167|Homo sapiens HNRPA1 protein protein. 35 0.31
BC104236-1|AAI04237.1| 167|Homo sapiens HNRPA1 protein protein. 35 0.31
BC103707-1|AAI03708.1| 267|Homo sapiens HNRPA1 protein protein. 35 0.31
BC074502-1|AAH74502.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
BC073162-1|AAH73162.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
BC071945-1|AAH71945.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
BC070315-1|AAH70315.1| 320|Homo sapiens HNRPA1 protein protein. 35 0.31
BC052296-1|AAH52296.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
BC033714-1|AAH33714.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
BC012158-1|AAH12158.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
BC009600-1|AAH09600.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
BC004945-1|AAH04945.1| 298|Homo sapiens Unknown (protein for IM... 35 0.31
BC002355-1|AAH02355.1| 320|Homo sapiens heterogeneous nuclear r... 35 0.31
AL137058-3|CAI16736.1| 320|Homo sapiens protein ( Human DNA seq... 35 0.31
U09123-1|AAB60650.1| 341|Homo sapiens hnRNP protein A2 protein. 32 1.7
M29065-1|AAA36574.1| 341|Homo sapiens protein ( Human hnRNP A2 ... 32 1.7
M29064-1|AAA60271.1| 353|Homo sapiens SNRPB1 protein. 32 1.7
D28877-2|BAA06032.1| 341|Homo sapiens hnRNP A2 protein protein. 32 1.7
D28877-1|BAA06031.1| 353|Homo sapiens hnRNP B1 protein protein. 32 1.7
BC108266-1|AAI08267.1| 320|Homo sapiens heterogeneous nuclear r... 32 2.2
BC128038-1|AAI28039.1| 146|Homo sapiens LOC728643 protein protein. 31 5.1
BC112995-1|AAI12996.1| 146|Homo sapiens LOC728643 protein protein. 31 5.1
>X79536-1|CAA56072.1| 320|Homo sapiens hnRNPcore protein A1
protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>X12671-1|CAA31191.1| 320|Homo sapiens hnrnp a1 protein protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>X06747-1|CAA29922.1| 320|Homo sapiens protein ( Human hnRNP core
protein A1. ).
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>X04347-1|CAA27874.1| 196|Homo sapiens protein ( Human liver mRNA
fragment DNA binding protein UPI homologue
(C-terminus). ).
Length = 196
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 138 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 165
>BC121133-1|AAI21134.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC104237-1|AAI04238.1| 167|Homo sapiens HNRPA1 protein protein.
Length = 167
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 109 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 136
>BC104236-1|AAI04237.1| 167|Homo sapiens HNRPA1 protein protein.
Length = 167
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 109 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 136
>BC103707-1|AAI03708.1| 267|Homo sapiens HNRPA1 protein protein.
Length = 267
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 209 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 236
>BC074502-1|AAH74502.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC073162-1|AAH73162.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC071945-1|AAH71945.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC070315-1|AAH70315.1| 320|Homo sapiens HNRPA1 protein protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC052296-1|AAH52296.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC033714-1|AAH33714.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC012158-1|AAH12158.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC009600-1|AAH09600.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>BC004945-1|AAH04945.1| 298|Homo sapiens Unknown (protein for
IMAGE:3615335) protein.
Length = 298
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 240 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 267
>BC002355-1|AAH02355.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1 protein.
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>AL137058-3|CAI16736.1| 320|Homo sapiens protein ( Human DNA
sequence from clone RP11-78J21 on chromosome
13q32.2-33.3 Contains 2 novel genes, a pseudogene
similar to part of TPTE and ).
Length = 320
Score = 34.7 bits (76), Expect = 0.31
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTPY 94
DFGNYN QS + GP + +G S PY
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGPY 289
>U09123-1|AAB60650.1| 341|Homo sapiens hnRNP protein A2 protein.
Length = 341
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 2 GN-QDFGNYNQQSYSGGPTRNQAYGNNRS 85
GN DFGNYNQQ + GP ++ +G +R+
Sbjct: 286 GNYNDFGNYNQQPSNYGPMKSGNFGGSRN 314
>M29065-1|AAA36574.1| 341|Homo sapiens protein ( Human hnRNP A2
protein mRNA. ).
Length = 341
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 2 GN-QDFGNYNQQSYSGGPTRNQAYGNNRS 85
GN DFGNYNQQ + GP ++ +G +R+
Sbjct: 286 GNYNDFGNYNQQPSNYGPMKSGNFGGSRN 314
>M29064-1|AAA60271.1| 353|Homo sapiens SNRPB1 protein.
Length = 353
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 2 GN-QDFGNYNQQSYSGGPTRNQAYGNNRS 85
GN DFGNYNQQ + GP ++ +G +R+
Sbjct: 298 GNYNDFGNYNQQPSNYGPMKSGNFGGSRN 326
>D28877-2|BAA06032.1| 341|Homo sapiens hnRNP A2 protein protein.
Length = 341
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 2 GN-QDFGNYNQQSYSGGPTRNQAYGNNRS 85
GN DFGNYNQQ + GP ++ +G +R+
Sbjct: 286 GNYNDFGNYNQQPSNYGPMKSGNFGGSRN 314
>D28877-1|BAA06031.1| 353|Homo sapiens hnRNP B1 protein protein.
Length = 353
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 2 GN-QDFGNYNQQSYSGGPTRNQAYGNNRS 85
GN DFGNYNQQ + GP ++ +G +R+
Sbjct: 298 GNYNDFGNYNQQPSNYGPMKSGNFGGSRN 326
>BC108266-1|AAI08267.1| 320|Homo sapiens heterogeneous nuclear
ribonucleoprotein A1-like protein.
Length = 320
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTP 91
DFGNYN QS + GP + +G S P
Sbjct: 262 DFGNYNNQSSNFGPMKGGNFGGRSSGP 288
>BC128038-1|AAI28039.1| 146|Homo sapiens LOC728643 protein protein.
Length = 146
Score = 30.7 bits (66), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTP 91
DFGNYN +S + GP + +G S P
Sbjct: 109 DFGNYNNESSNFGPMKGGNFGGRSSGP 135
>BC112995-1|AAI12996.1| 146|Homo sapiens LOC728643 protein protein.
Length = 146
Score = 30.7 bits (66), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +2
Query: 11 DFGNYNQQSYSGGPTRNQAYGNNRSTP 91
DFGNYN +S + GP + +G S P
Sbjct: 109 DFGNYNNESSNFGPMKGGNFGGRSSGP 135
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 82,494,266
Number of Sequences: 237096
Number of extensions: 1346697
Number of successful extensions: 1619
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -