Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30139
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -2

Query: 650 QKPYNSVH---INIEILLNMS*GAHLMSNNPEGF*LVSRVDHDECI*CSG-AYCLH*HG* 483
           +K Y+ VH   IN+++L  M    H MS N +G   + +V H  C+  S   YC      
Sbjct: 417 EKTYSDVHQKQINLDLLRTMPNNVHFMSANSKGVTQLLQVLHAFCLHNSQIGYC-QGMNF 475

Query: 482 LCFTSVLSTKPRD 444
           L  T++L   P D
Sbjct: 476 LAATALLFVGPED 488


>Z93396-6|CAB07715.1|  109|Caenorhabditis elegans Hypothetical
          protein ZC15.8 protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +2

Query: 14 FGNYNQQSYSGGPTRNQAYGNNR 82
          F  Y QQ Y   P  NQ Y NN+
Sbjct: 15 FAQYQQQQYQQQPYNNQQYSNNQ 37


>Z81016-5|CAB02665.3|  640|Caenorhabditis elegans Hypothetical
           protein F21G4.1 protein.
          Length = 640

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 542 HARPARSPQDC*TLDEPLSSYLEEFQYLCELNCKASVYL 658
           H+RP  SP+D  T  E ++ +L EF  + +      VY+
Sbjct: 278 HSRPQVSPEDRLTFKENITLFLREFPMVLKKLITNKVYI 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,059,964
Number of Sequences: 27780
Number of extensions: 222306
Number of successful extensions: 463
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)