Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30139
         (690 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei...    31   0.95 
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei...    31   0.95 
At3g15180.1 68416.m01919 proteasome-related similar to 26S prote...    29   3.8  

>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 17  GNYNQQSYSGGPTRNQAYGNNRSTPY 94
           G+  + +YS GP RN  +G NRS PY
Sbjct: 398 GDRRRDNYSSGPDRNH-HGGNRSRPY 422


>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
           weak similarity to SP|Q01844 RNA-binding protein EWS
           (EWS oncogene) (Ewing sarcoma breakpoint region 1
           protein) {Homo sapiens}; contains Pfam profiles PF00076:
           RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
           PF00641: Zn-finger in Ran binding protein and others
          Length = 422

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 17  GNYNQQSYSGGPTRNQAYGNNRSTPY 94
           G+  + +YS GP RN  +G NRS PY
Sbjct: 398 GDRRRDNYSSGPDRNH-HGGNRSRPY 422


>At3g15180.1 68416.m01919 proteasome-related similar to 26S
           proteasome non-ATPase regulatory subunit 5 (26S
           proteasome subunit S5B) (26S protease subunit S5 basic)
           (Swiss-Prot:Q16401) [Homo sapiens]
          Length = 519

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +3

Query: 435 IFSISRFRAKYTSKAELTVLV*AVRSGALDTLIMVHTRDQLEALRIVRH 581
           +FSISR  A    K+ L  L+ A   G  DTL++++  +    L  V H
Sbjct: 190 LFSISRLVASEVKKSGLLDLLEAEMKGTKDTLVILNVLELYYELMEVEH 238


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,011,029
Number of Sequences: 28952
Number of extensions: 197372
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)