Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30137
(670 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces po... 137 2e-33
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 69 6e-13
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 69 8e-13
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 66 6e-12
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 61 1e-10
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 54 1e-08
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 54 2e-08
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 53 3e-08
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 52 6e-08
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 50 2e-07
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb... 50 2e-07
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 50 4e-07
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 49 7e-07
SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1 |Schiz... 47 2e-06
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 46 4e-06
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p... 45 9e-06
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po... 45 9e-06
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 43 5e-05
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 43 5e-05
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc... 36 0.004
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 31 0.15
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 31 0.20
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 29 0.80
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 28 1.1
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 28 1.4
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 28 1.4
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 28 1.4
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 27 1.8
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 27 2.4
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 27 2.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 3.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 4.3
SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator comp... 26 5.6
SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr 1|||Ma... 26 5.6
SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78 |Schizosacch... 26 5.6
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 26 5.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 26 5.6
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual 25 7.5
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi... 25 7.5
SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|... 25 7.5
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 25 7.5
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex... 25 7.5
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb... 25 9.9
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 9.9
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 25 9.9
>SPAC2G11.06 |vps4||AAA family ATPase Vps4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 137 bits (331), Expect = 2e-33
Identities = 75/190 (39%), Positives = 103/190 (54%), Gaps = 2/190 (1%)
Frame = +3
Query: 105 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAK 284
M++ + L KAI LV A + D + Y +A + Y+ ++YF+ A+KYE + E++KE IR+K
Sbjct: 1 MSNPDCLSKAISLVKTAIDNDNAEQYPDAYKYYQSALDYFMMALKYE-KNEKSKEIIRSK 59
Query: 285 CLQYLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--LQGKLEGAI 458
++YLDRA L+ L AI
Sbjct: 60 VIEYLDRAEKLKVYLQEKNNQISSKSRVSNGNVEGSNSPTANEALDSDAKKLRSALTSAI 119
Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLA 638
+VEKP+V+W D+AG V+LPIK P LF+ R PW GILL+GPPGTGKSYLA
Sbjct: 120 LVEKPNVRWDDIAGLENAKEALKETVLLPIKLPQLFSHGRKPWSGILLYGPPGTGKSYLA 179
Query: 639 KAVATEANNS 668
KAVATEA ++
Sbjct: 180 KAVATEAGST 189
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 68.9 bits (161), Expect = 6e-13
Identities = 35/68 (51%), Positives = 41/68 (60%)
Frame = +3
Query: 456 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYL 635
I+ V WSD+AG VI P P LF G R P +G+LLFGPPGTGK+ L
Sbjct: 369 IISNHEPVYWSDIAGLDDAKNSLKEAVIYPFLRPELFQGLREPVQGMLLFGPPGTGKTML 428
Query: 636 AKAVATEA 659
A+AVATEA
Sbjct: 429 ARAVATEA 436
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 68.5 bits (160), Expect = 8e-13
Identities = 33/70 (47%), Positives = 42/70 (60%)
Frame = +3
Query: 456 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYL 635
IVV V W D++G V+ P P LF G R P +G+LLFGPPGTGK+ L
Sbjct: 449 IVVSGDEVHWDDISGLEFAKHSLKEAVVYPFLRPDLFQGLREPARGMLLFGPPGTGKTML 508
Query: 636 AKAVATEANN 665
A+AVATE+ +
Sbjct: 509 ARAVATESRS 518
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 65.7 bits (153), Expect = 6e-12
Identities = 30/62 (48%), Positives = 38/62 (61%)
Frame = +3
Query: 471 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVA 650
P V W D+ G + LP++FP LF+ P G+LL+GPPGTGK+ LAKAVA
Sbjct: 650 PKVNWDDIGGLEEAKTVLRDTLQLPLQFPELFSQGLKPRSGVLLYGPPGTGKTLLAKAVA 709
Query: 651 TE 656
TE
Sbjct: 710 TE 711
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 61.3 bits (142), Expect = 1e-10
Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635
VVE P+V+W D+ G V +P+ + F + P KG+L FGPPGTGK+ L
Sbjct: 488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLL 547
Query: 636 AKAVATEAN 662
AKA+A E +
Sbjct: 548 AKAIANECS 556
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +3
Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653
V + D+ G V LP++ P LF I P +GIL++GPPGTGK+ +A+AVA
Sbjct: 221 VGYDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVAN 280
Query: 654 E 656
E
Sbjct: 281 E 281
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 54.4 bits (125), Expect = 1e-08
Identities = 32/71 (45%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +3
Query: 444 LEGAIVVEK-PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPG 617
L ++VEK P + V G + LP+K P LF IP KGILL+GPPG
Sbjct: 130 LVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPVKHPELFESLGIPQPKGILLYGPPG 189
Query: 618 TGKSYLAKAVA 650
TGK+ LA+AVA
Sbjct: 190 TGKTLLARAVA 200
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 53.6 bits (123), Expect = 2e-08
Identities = 30/69 (43%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Frame = +3
Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635
V EKP V + DV G V LP+ P F I P KGI+L+GPPGTGK+
Sbjct: 170 VEEKPDVTYGDVGGCKEQIERLREVVELPLLSPERFVKLGIDPPKGIMLYGPPGTGKTLC 229
Query: 636 AKAVATEAN 662
A+AVA +
Sbjct: 230 ARAVANRTD 238
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 53.2 bits (122), Expect = 3e-08
Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Frame = +3
Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635
V EKP ++SD+ G ++LP++ F + P KG L+FGPPGTGK+ L
Sbjct: 176 VDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLL 235
Query: 636 AKAVATEAN 662
A+A A ++N
Sbjct: 236 ARACAAQSN 244
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 52.4 bits (120), Expect = 6e-08
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Frame = +3
Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635
++E P+V WSD+ G V P+ F+ + P KG+LL+GPPG K+
Sbjct: 539 MMESPNVHWSDIGGQEEVKQKLKESVEWPLTHGETFSRLGVRPPKGVLLYGPPGCSKTIT 598
Query: 636 AKAVATE 656
AKA+ATE
Sbjct: 599 AKAIATE 605
Score = 50.4 bits (115), Expect = 2e-07
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Frame = +3
Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653
V +S + G V LP + P LF I P +G+LL+GPPGTGK+ + +AVA
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVAA 335
Query: 654 EAN 662
EAN
Sbjct: 336 EAN 338
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 50.4 bits (115), Expect = 2e-07
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Frame = +3
Query: 462 VEKP-HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635
+E P + ++ V G + LP+K P LF I P KG+LL+GPPGTGK+ L
Sbjct: 123 IEDPGDISFAGVGGLNEQIRELREVIELPLKNPELFLRVGIKPPKGVLLYGPPGTGKTLL 182
Query: 636 AKAVA 650
A+AVA
Sbjct: 183 ARAVA 187
>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 779
Score = 50.4 bits (115), Expect = 2e-07
Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 441 KLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWK-GILLFGPPG 617
K EG V P V W+++ ++ PIK P L+ I G+LL+GPPG
Sbjct: 479 KREGFATV--PGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPG 536
Query: 618 TGKSYLAKAVATEA 659
GK+ LAKAVA E+
Sbjct: 537 CGKTLLAKAVANES 550
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653
+ SD+ G V +PIK P ++ I P +G+LL GPPG GK+ LA A+A
Sbjct: 171 ISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALAN 230
Query: 654 E 656
E
Sbjct: 231 E 231
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 49.6 bits (113), Expect = 4e-07
Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Frame = +3
Query: 465 EKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 641
E+P V ++DV G V LP+ L+ I P +G+LL+GPPGTGK+ L K
Sbjct: 127 ERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVK 186
Query: 642 AVA--TEAN 662
AVA T AN
Sbjct: 187 AVANSTAAN 195
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 48.8 bits (111), Expect = 7e-07
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 471 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 647
P ++D+ G V LP+ P L+ I P KG++L+G PGTGK+ LAKAV
Sbjct: 186 PTESYADIGGLESQIQEIKEAVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAV 245
Query: 648 ATEAN 662
A + +
Sbjct: 246 ANQTS 250
>SPCC24B10.10c |||mitochondrial outer membrane ATPase Msp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 355
Score = 47.2 bits (107), Expect = 2e-06
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Frame = +3
Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT---GKRIPWKGILLFGPPGTGKSYLAKAV 647
V + D+ G V+ P+K+P +F G KG+LL+GPPG GK+ LAKA+
Sbjct: 86 VSFDDIGGMDEHVNQLLQDVLFPLKYPEVFDTHGGLLSCPKGLLLYGPPGCGKTMLAKAL 145
Query: 648 ATEA 659
A ++
Sbjct: 146 AKQS 149
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 46.4 bits (105), Expect = 4e-06
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 474 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAV 647
+V++SDV G V ++ P FT G ++P +G+LL GPPGTGK+ LA+AV
Sbjct: 263 NVRFSDVQGVDEAKEELEEIVDF-LRDPTHFTRLGGKLP-RGVLLTGPPGTGKTMLARAV 320
Query: 648 ATEAN 662
A EAN
Sbjct: 321 AGEAN 325
>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 773
Score = 45.2 bits (102), Expect = 9e-06
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Frame = +3
Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 650
+K++DVAG V +K P + G +IP +G +L GPPGTGK+ LAKA A
Sbjct: 293 IKFADVAGVDEAKEEIMEFVKF-LKNPKFYERLGAKIP-RGAILSGPPGTGKTLLAKATA 350
Query: 651 TEAN 662
EAN
Sbjct: 351 GEAN 354
>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 937
Score = 45.2 bits (102), Expect = 9e-06
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +3
Query: 468 KPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWK-GILLFGPPGTGKSYLAKA 644
K ++W D+AG + P+K+ ++ R+ GILLFG PG GK+YLA A
Sbjct: 600 KSSIRWIDIAGMQEAKEAVRDIIESPVKYSLIYKQCRLRLPTGILLFGYPGCGKTYLASA 659
Query: 645 VAT 653
+++
Sbjct: 660 ISS 662
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 42.7 bits (96), Expect = 5e-05
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653
+ + V G V+LP+ +P +F + P +G+L GPPGTGK+ +A+A+A
Sbjct: 263 LSFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALAA 322
Query: 654 EANN 665
++
Sbjct: 323 ACSS 326
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 42.7 bits (96), Expect = 5e-05
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 468 KPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKA 644
+ ++ ++ + G V+LP+ +P +F I P +G+L GPPGTGK+ +A+
Sbjct: 366 RENLDFNSIGGLEDIILQLKEMVMLPLLYPEVFLHLHITPPRGVLFHGPPGTGKTLMARV 425
Query: 645 VATEAN 662
+A +
Sbjct: 426 LAANCS 431
>SPAC1834.11c |sec18||secretory pathway protein Sec18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 792
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 588 KGILLFGPPGTGKSYLAKAVATEAN 662
KGILL+GPPGTGK+ +A+ + N
Sbjct: 305 KGILLYGPPGTGKTLIARQIGKMLN 329
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = +3
Query: 561 LFTGKRIPWKGILLFGPPGTGKSYLAKAVATE 656
L K+ KG+L G GTGK+ LA A+A E
Sbjct: 56 LIKSKKFGGKGVLFAGGAGTGKTALALAIAQE 87
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 30.7 bits (66), Expect = 0.20
Identities = 14/27 (51%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = +3
Query: 579 IPWK-GILLFGPPGTGKSYLAKAVATE 656
IP++ G LL+GPPG+GK+ A+A E
Sbjct: 239 IPYRRGYLLYGPPGSGKTSFLYALAGE 265
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 28.7 bits (61), Expect = 0.80
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 576 RIPWKGILLFGPPGTGKSYLAKAVA 650
RI + IL+ GPP TGK+ +A +A
Sbjct: 62 RIAGRAILMAGPPSTGKTAIAMGMA 86
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 585 WKGILLFGPPGTGKSYLAKAVA 650
+K +LL GPPG GK+ A VA
Sbjct: 409 YKAVLLSGPPGIGKTTAAHLVA 430
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 615 QGVQIIRCPSMVFSCQ*TNVEILLVELQPLSML 517
+ +QI R P + F T EIL+ +++PL+++
Sbjct: 16 RAIQICRIPKVSFFVVLTETEILIYQIRPLTLI 48
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 588 KGILLFGPPGTGKSYLAKAVATEAN 662
K + L GPPG GK+ + K++A+ N
Sbjct: 572 KIMCLVGPPGVGKTSVGKSIASALN 596
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Frame = +3
Query: 597 LLFGPPGTGKSYLA-KAVATEANNS 668
++ GPPGTGKS++ KA+ T N+
Sbjct: 390 IIQGPPGTGKSFVTLKAIETLLENT 414
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 582 PWKGILLFGPPGTGKSYLAKAVAT 653
P L GP GTGK+ L KA+A+
Sbjct: 613 PIASFLFCGPSGTGKTLLTKALAS 636
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 27.1 bits (57), Expect = 2.4
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = +3
Query: 594 ILLFGPPGTGKSYLAKAVA--TEANN 665
I++ G PGTGK+ LA+ VA TE N
Sbjct: 11 IIICGTPGTGKTTLAEQVAETTELEN 36
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = +3
Query: 594 ILLFGPPGTGKSYLAKAV 647
+ + GPPGTGKS L K++
Sbjct: 77 VAVMGPPGTGKSTLIKSL 94
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 3.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +3
Query: 588 KGILLFGPPGTGKSYLAKAVATEANN 665
K ILL G PG GK+ L A+A E +
Sbjct: 1560 KPILLEGSPGVGKTSLITALARETGH 1585
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 4.3
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = -1
Query: 604 NNKMPFHGILLPVNKCGNFIGR--ITASFNASLAASRPAT 491
+N G+LLP+NKC + R I A +++ AS T
Sbjct: 2177 SNPEALDGLLLPLNKCFQKVARDHIVACMQSAIQASGKVT 2216
>SPAC2F7.04 |pmc2|med1|RNA polymerase II holoenzyme mediator complex
subunit |Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = +3
Query: 159 EEDKNKNYEEALR--LYEHGVEYFLHAVKYEAQGERAKESIRAKCLQYLD 302
E+ N E+ L+ +Y F VK+ A + + S++ C QYLD
Sbjct: 102 EQYNNPVAEKLLKDAIYNCNTPLFEKNVKWLATFDHSSPSVQQSCFQYLD 151
>SPAC4G9.12 |||gluconokinase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 193
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +3
Query: 582 PWKGI-LLFGPPGTGKSYLAKAVA 650
P+K + ++ GP G+GK+ +AKAV+
Sbjct: 12 PYKYVFVVIGPAGSGKTTMAKAVS 35
>SPBC4F6.17c |||mitochondrial matrix chaperone Hsp78
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 803
Score = 25.8 bits (54), Expect = 5.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 582 PWKGILLFGPPGTGKSYLAKAVA 650
P L GP G GK+ L KA+A
Sbjct: 531 PLASFLFLGPTGVGKTALTKALA 553
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 5.6
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 105 MTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQ 251
+TSS + KAI L TK+ + K N L + +E +K E +
Sbjct: 360 ITSSTKITKAIGLNTKSNDSSKKDNTSFQLHQVLNSIEIPKVEIKQEVE 408
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 25.8 bits (54), Expect = 5.6
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +3
Query: 150 KATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESI 275
K +E K+K+ ++ +LYE + + +YE E KE +
Sbjct: 164 KKLQEKKDKSLKDEKKLYEAETAFEQSSQEYEYYNEMLKEEL 205
>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
Length = 426
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 399 HYHSSYHHFWIPHPLLVFSFDLF*DIPLIFQLYQDIEG-ILHECFLLPFHL 250
+++ + +W + + F F L IP++F L+ I G LH + HL
Sbjct: 302 YWNVGFLRYWTLNNIPNFLFALLSIIPILFALFYSISGSTLHSFRSIKSHL 352
>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 865
Score = 25.4 bits (53), Expect = 7.5
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 607 PNNKMPFHGILLPVNKCGNFIGRITASFNASLAASRP 497
PN + F +L GNF+ T S L AS P
Sbjct: 441 PNKRWHFDTLLRVFKSAGNFVSESTLSTFLRLIASAP 477
>SPAC630.09c |mug58||glycerate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 277
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 606 GPPGTGKSYLAKAVATE 656
GP G+GKS LA A+ TE
Sbjct: 32 GPQGSGKSTLASALDTE 48
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 588 KGILLFGPPGTGKSYLAK 641
K +++FGP G GKS L K
Sbjct: 19 KPVVVFGPSGVGKSTLLK 36
>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 342
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 567 TGKRIPWKGILLFGPPGTGKSYLAKAVA 650
+ R+P +L +GPPGTGK+ A A
Sbjct: 52 SSNRVPH--MLFYGPPGTGKTSTILACA 77
>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 324 IPLIFQLYQDIEGILHEC 271
IP LY D+ GILH C
Sbjct: 26 IPEFDNLYLDMNGILHNC 43
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -2
Query: 318 LIFQLYQDIEGILHECFLLPFHL 250
L+FQ YQ I + ++CF HL
Sbjct: 497 LLFQFYQSIMDLNNDCFTNTSHL 519
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 25.0 bits (52), Expect = 9.9
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 74 CTIIVVNLKNNDIIKYLTKSY 136
CT++ V+ KN+++I+ L SY
Sbjct: 227 CTVLYVSAKNHNLIEALPLSY 247
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,417
Number of Sequences: 5004
Number of extensions: 41515
Number of successful extensions: 194
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -