BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= maV30137 (670 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 127 8e-30 At2g34560.2 68415.m04246 katanin, putative similar to katanin p6... 83 1e-16 At2g34560.1 68415.m04245 katanin, putative similar to katanin p6... 83 1e-16 At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1... 82 4e-16 At2g45500.1 68415.m05659 AAA-type ATPase family protein similar ... 75 6e-14 At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWI... 69 3e-12 At3g19740.1 68416.m02499 AAA-type ATPase family protein contains... 63 2e-10 At1g64110.2 68414.m07264 AAA-type ATPase family protein contains... 63 2e-10 At1g64110.1 68414.m07263 AAA-type ATPase family protein contains... 63 2e-10 At1g50140.1 68414.m05623 AAA-type ATPase family protein contains... 61 7e-10 At1g03000.1 68414.m00271 AAA-type ATPase family protein contains... 60 1e-09 At1g02890.1 68414.m00256 AAA-type ATPase family protein contains... 60 1e-09 At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 59 3e-09 At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochond... 58 5e-09 At4g28000.1 68417.m04016 AAA-type ATPase family protein contains... 58 5e-09 At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochond... 58 5e-09 At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 57 9e-09 At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 57 1e-08 At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 57 1e-08 At4g24860.1 68417.m03559 AAA-type ATPase family protein contains... 56 2e-08 At3g01610.1 68416.m00092 AAA-type ATPase family protein contains... 54 7e-08 At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 54 7e-08 At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 54 9e-08 At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 53 2e-07 At2g03670.1 68415.m00326 AAA-type ATPase family protein contains... 52 3e-07 At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 52 5e-07 At3g56690.1 68416.m06306 calmodulin-binding protein identical to... 51 6e-07 At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 51 6e-07 At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 50 1e-06 At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc... 50 1e-06 At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 50 2e-06 At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 50 2e-06 At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc ... 49 2e-06 At1g08270.1 68414.m00913 expressed protein low similarity to SP|... 49 2e-06 At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 49 3e-06 At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 49 3e-06 At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 48 4e-06 At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 48 4e-06 At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 48 7e-06 At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH... 47 1e-05 At1g08270.2 68414.m00912 expressed protein low similarity to SP|... 47 1e-05 At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, c... 46 2e-05 At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH... 45 4e-05 At2g26140.1 68415.m03137 FtsH protease, putative contains simila... 45 4e-05 At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-... 44 1e-04 At5g64580.1 68418.m08116 AAA-type ATPase family protein similar ... 43 2e-04 At3g02450.1 68416.m00232 cell division protein ftsH, putative si... 43 2e-04 At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) id... 43 2e-04 At4g23940.1 68417.m03443 FtsH protease, putative contains simila... 43 2e-04 At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 42 4e-04 At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 41 6e-04 At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 41 6e-04 At3g16290.1 68416.m02056 FtsH protease, putative contains simila... 40 0.001 At3g28520.1 68416.m03562 AAA-type ATPase family protein contains... 39 0.003 At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 39 0.003 At3g28510.1 68416.m03561 AAA-type ATPase family protein contains... 39 0.003 At3g28540.1 68416.m03564 AAA-type ATPase family protein contains... 38 0.005 At5g58870.1 68418.m07376 FtsH protease, putative contains simila... 38 0.006 At5g17730.1 68418.m02079 AAA-type ATPase family protein contains... 38 0.008 At4g05380.1 68417.m00820 AAA-type ATPase family protein contains... 38 0.008 At3g50940.1 68416.m05577 AAA-type ATPase family protein contains... 38 0.008 At3g50930.1 68416.m05576 AAA-type ATPase family protein contains... 37 0.014 At4g04910.1 68417.m00714 AAA-type ATPase family protein similar ... 36 0.018 At3g28610.1 68416.m03571 AAA-type ATPase family protein contains... 36 0.032 At5g40010.1 68418.m04852 AAA-type ATPase family protein contains... 35 0.043 At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuc... 35 0.043 At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 35 0.043 At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 35 0.043 At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ... 35 0.043 At3g28600.1 68416.m03570 AAA-type ATPase family protein contains... 35 0.043 At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 35 0.043 At1g43910.1 68414.m05066 AAA-type ATPase family protein contains... 35 0.043 At4g30250.1 68417.m04301 AAA-type ATPase family protein contains... 35 0.056 At2g18193.1 68415.m02117 AAA-type ATPase family protein contains... 35 0.056 At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 35 0.056 At1g79560.1 68414.m09275 FtsH protease, putative contains simila... 34 0.074 At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 34 0.098 At4g25835.1 68417.m03716 AAA-type ATPase family protein contains... 34 0.098 At3g28570.1 68416.m03567 AAA-type ATPase family protein contains... 34 0.098 At5g22330.1 68418.m02605 TATA box-binding protein-interacting pr... 33 0.13 At3g03060.1 68416.m00302 AAA-type ATPase family protein contains... 33 0.13 At2g18330.1 68415.m02136 AAA-type ATPase family protein contains... 33 0.13 At5g16930.1 68418.m01984 AAA-type ATPase family protein contains... 33 0.17 At4g36580.1 68417.m05193 AAA-type ATPase family protein contains... 33 0.17 At4g24710.1 68417.m03536 AAA-type ATPase family protein similar ... 33 0.17 At3g04340.1 68416.m00459 FtsH protease family protein similar to... 33 0.23 At4g04180.1 68417.m00593 AAA-type ATPase family protein contains... 32 0.40 At5g17750.1 68418.m02081 AAA-type ATPase family protein contains... 31 0.69 At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 31 0.92 At3g30842.1 68416.m03968 ABC transporter protein, putative simil... 30 1.6 At2g29940.1 68415.m03642 ABC transporter family protein similar ... 30 1.6 At2g37280.1 68415.m04573 ABC transporter family protein similar ... 29 2.1 At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive eff... 29 2.1 At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding ... 29 2.8 At1g77470.1 68414.m09021 replication factor C 36 kDA, putative s... 29 2.8 At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ... 29 2.8 At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative... 29 3.7 At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding ... 29 3.7 At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding ... 29 3.7 At1g21690.2 68414.m02715 replication factor C 37 kDa, putative S... 29 3.7 At1g21690.1 68414.m02714 replication factor C 37 kDa, putative S... 29 3.7 At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive eff... 28 4.9 At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 6.5 At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 6.5 At4g15230.1 68417.m02333 ABC transporter family protein similar ... 28 6.5 At4g15215.1 68417.m02332 ABC transporter family protein similar ... 28 6.5 At3g60160.1 68416.m06717 ABC transporter family protein similar ... 28 6.5 At2g46620.1 68415.m05815 AAA-type ATPase family protein contains... 28 6.5 At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR ... 28 6.5 At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing... 27 8.5 At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP1... 27 8.5 At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identic... 27 8.5 At1g73170.1 68414.m08466 expressed protein 27 8.5 At1g71960.1 68414.m08318 ABC transporter family protein similar ... 27 8.5 At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containi... 27 8.5 >At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar sorting protein-related similar to SP|P46467 SKD1 protein (Vacuolar sorting protein 4b) {Mus musculus}; contains Pfam profiles PF00004: ATPase AAA family, PF04212: MIT domain Length = 435 Score = 127 bits (306), Expect = 8e-30 Identities = 75/191 (39%), Positives = 97/191 (50%), Gaps = 6/191 (3%) Frame = +3 Query: 114 SNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRAKCLQ 293 SN ++AI+ V +A ED NY +A LY + +EYF +KYE + + +E+I K + Sbjct: 3 SNFKEQAIEYVKQAVHEDNAGNYNKAFPLYMNALEYFKTHLKYE-KNPKIREAITQKFTE 61 Query: 294 YLDRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------LQGKLEGA 455 YL RA L+ L A Sbjct: 62 YLRRAEEIRAVLDEGGSGPGSNGDAAVATRPKTKPKDGEGGGKDGEDPEQSKLRAGLNSA 121 Query: 456 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYL 635 IV EKP++KWSDVAG VILP+KFP FTGKR PW+ LL+GPPGTGKSYL Sbjct: 122 IVREKPNIKWSDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYL 181 Query: 636 AKAVATEANNS 668 AKAVATEA+++ Sbjct: 182 AKAVATEADST 192 >At2g34560.2 68415.m04246 katanin, putative similar to katanin p60 subunit [Strongylocentrotus purpuratus] GI:3098603; contains Pfam profile PF00004: ATPase AAA family Length = 393 Score = 83.4 bits (197), Expect = 1e-16 Identities = 38/79 (48%), Positives = 47/79 (59%) Frame = +3 Query: 432 LQGKLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGP 611 L L I+ P++KW + G V++PIK+P F G PWKGILLFGP Sbjct: 94 LAESLSRDIIRGNPNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGP 153 Query: 612 PGTGKSYLAKAVATEANNS 668 PGTGK+ LAKAVATE N + Sbjct: 154 PGTGKTMLAKAVATECNTT 172 >At2g34560.1 68415.m04245 katanin, putative similar to katanin p60 subunit [Strongylocentrotus purpuratus] GI:3098603; contains Pfam profile PF00004: ATPase AAA family Length = 384 Score = 83.4 bits (197), Expect = 1e-16 Identities = 38/79 (48%), Positives = 47/79 (59%) Frame = +3 Query: 432 LQGKLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGP 611 L L I+ P++KW + G V++PIK+P F G PWKGILLFGP Sbjct: 85 LAESLSRDIIRGNPNIKWESIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGP 144 Query: 612 PGTGKSYLAKAVATEANNS 668 PGTGK+ LAKAVATE N + Sbjct: 145 PGTGKTMLAKAVATECNTT 163 >At1g80350.1 68414.m09406 katanin 1 (KTN1) identical to katanin 1 (KTN1) [Arabidopsis thaliana] GI:14133602 Length = 523 Score = 81.8 bits (193), Expect = 4e-16 Identities = 38/79 (48%), Positives = 47/79 (59%) Frame = +3 Query: 432 LQGKLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGP 611 L LE ++ P V+W DVAG V+LP+ P F G R PWKG+L+FGP Sbjct: 221 LAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGP 280 Query: 612 PGTGKSYLAKAVATEANNS 668 PGTGK+ LAKAVATE + Sbjct: 281 PGTGKTLLAKAVATECGTT 299 >At2g45500.1 68415.m05659 AAA-type ATPase family protein similar to SP|Q9QYY8 Spastin (Fragment) {Mus musculus}; contains Pfam profiles PF00004: ATPase AAA family, PF04212: MIT domain Length = 487 Score = 74.5 bits (175), Expect = 6e-14 Identities = 38/68 (55%), Positives = 43/68 (63%) Frame = +3 Query: 456 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYL 635 IV P VKW DVAG VILP K LFTG R P +G+LLFGPPG GK+ L Sbjct: 206 IVDRSPSVKWDDVAGLNGAKQALLEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTML 265 Query: 636 AKAVATEA 659 AKAVA+E+ Sbjct: 266 AKAVASES 273 >At3g27120.1 68416.m03393 spastin ATPase, putative similar to SWISS-PROT:Q9QYY8 spastin (Fragment) [Mus musculus]; contains Pfam domain, PF00004: ATPase, AAA family Length = 287 Score = 68.9 bits (161), Expect = 3e-12 Identities = 31/63 (49%), Positives = 40/63 (63%) Frame = +3 Query: 471 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVA 650 P+V+W D+AG VI P+ P +F G R P KG+LLFGPPGTGK+ + KA+A Sbjct: 5 PNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFKGCRSPGKGLLLFGPPGTGKTMIGKAIA 64 Query: 651 TEA 659 EA Sbjct: 65 GEA 67 >At3g19740.1 68416.m02499 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 439 Score = 62.9 bits (146), Expect = 2e-10 Identities = 33/63 (52%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 650 VK+ D+ VILP++ P LFT + P KGILLFGPPGTGK+ LAKA+A Sbjct: 147 VKFDDIGALEHVKKTLNELVILPMRRPELFTRGNLLRPCKGILLFGPPGTGKTLLAKALA 206 Query: 651 TEA 659 TEA Sbjct: 207 TEA 209 >At1g64110.2 68414.m07264 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 829 Score = 62.9 bits (146), Expect = 2e-10 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +3 Query: 456 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSY 632 I E+ +V + D+ V+LP++ P LFTG + P +GILLFGPPGTGK+ Sbjct: 511 IPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTM 570 Query: 633 LAKAVATEANNS 668 LAKA+A EA S Sbjct: 571 LAKAIAKEAGAS 582 >At1g64110.1 68414.m07263 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 824 Score = 62.9 bits (146), Expect = 2e-10 Identities = 33/72 (45%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Frame = +3 Query: 456 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSY 632 I E+ +V + D+ V+LP++ P LFTG + P +GILLFGPPGTGK+ Sbjct: 506 IPAEEINVTFKDIGALDEIKESLQELVMLPLRRPDLFTGGLLKPCRGILLFGPPGTGKTM 565 Query: 633 LAKAVATEANNS 668 LAKA+A EA S Sbjct: 566 LAKAIAKEAGAS 577 >At1g50140.1 68414.m05623 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 640 Score = 60.9 bits (141), Expect = 7e-10 Identities = 32/63 (50%), Positives = 39/63 (61%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 650 VK+ D+ VILP++ P LF + P KGILLFGPPGTGK+ LAKA+A Sbjct: 348 VKFEDIGALEDVKKALNELVILPMRRPELFARGNLLRPCKGILLFGPPGTGKTLLAKALA 407 Query: 651 TEA 659 TEA Sbjct: 408 TEA 410 >At1g03000.1 68414.m00271 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 941 Score = 60.5 bits (140), Expect = 1e-09 Identities = 30/64 (46%), Positives = 37/64 (57%) Frame = +3 Query: 471 PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVA 650 P+VKW DV G V LP+ LF+ G+LL+GPPGTGK+ LAKAVA Sbjct: 653 PNVKWDDVGGLEDVKTSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVA 712 Query: 651 TEAN 662 TE + Sbjct: 713 TECS 716 >At1g02890.1 68414.m00256 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family; similar to mitochondrial sorting protein 1 (MSP1) (TAT-binding homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae] Length = 1252 Score = 60.1 bits (139), Expect = 1e-09 Identities = 32/63 (50%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 650 V +SD+ V+LP++ P LF ++ P KGILLFGPPGTGK+ LAKAVA Sbjct: 947 VSFSDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1006 Query: 651 TEA 659 TEA Sbjct: 1007 TEA 1009 >At4g02480.1 68417.m00335 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family; similar to Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin (Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar to mitochondrial sorting protein 1 (MSP1) protein (TAT-binding homolog 4) (Swiss-Prot:P28737) [Saccharomyces cerevisiae] Length = 1265 Score = 58.8 bits (136), Expect = 3e-09 Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 650 V + D+ V+LP++ P LF ++ P KGILLFGPPGTGK+ LAKAVA Sbjct: 960 VSFDDIGALENVKETLKELVMLPLQRPELFDKGQLTKPTKGILLFGPPGTGKTMLAKAVA 1019 Query: 651 TEA 659 TEA Sbjct: 1020 TEA 1022 >At5g53540.1 68418.m06653 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family Length = 403 Score = 58.0 bits (134), Expect = 5e-09 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT-GKRI-PWKGILLFGPPGTGKSYLAKAVA 650 V++ + G VILP+K P LF GK + P KG+LL+GPPGTGK+ LAKA+A Sbjct: 84 VEFGSIGGLESIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIA 143 Query: 651 TEA 659 E+ Sbjct: 144 RES 146 >At4g28000.1 68417.m04016 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 726 Score = 58.0 bits (134), Expect = 5e-09 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 1/65 (1%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653 V ++D+ V+LP++ P LF G + P +GILLFGPPGTGK+ +AKA+A Sbjct: 411 VTFADIGSLDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMMAKAIAN 470 Query: 654 EANNS 668 EA S Sbjct: 471 EAGAS 475 >At4g27680.1 68417.m03980 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to Swiss-Prot:P28737 MSP1 protein (TAT-binding homolog 4) [Saccharomyces cerevisiae]; contains Pfam domain, PF00004: ATPase, AAA family Length = 398 Score = 58.0 bits (134), Expect = 5e-09 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT-GKRI-PWKGILLFGPPGTGKSYLAKAVA 650 V++ + G VILP+K P LF GK + P KG+LL+GPPGTGK+ LAKA+A Sbjct: 81 VEFGSIGGLETIKQALYELVILPLKRPELFAYGKLLGPQKGVLLYGPPGTGKTMLAKAIA 140 Query: 651 TEA 659 E+ Sbjct: 141 KES 143 >At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A) (CDC48) identical to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana} Length = 809 Score = 57.2 bits (132), Expect = 9e-09 Identities = 28/67 (41%), Positives = 38/67 (56%), Gaps = 1/67 (1%) Frame = +3 Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 VVE P+V W+D+ G V P++ P F + P KG+L +GPPG GK+ L Sbjct: 471 VVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 530 Query: 636 AKAVATE 656 AKA+A E Sbjct: 531 AKAIANE 537 Score = 52.0 bits (119), Expect = 3e-07 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653 V + DV G V LP++ P LF + P KGILL+GPPG+GK+ +A+AVA Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263 Query: 654 E 656 E Sbjct: 264 E 264 >At5g03340.1 68418.m00286 cell division cycle protein 48, putative / CDC48, putative very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain; supporting cDNA gi|26449351|dbj|AK117125.1| Length = 810 Score = 56.8 bits (131), Expect = 1e-08 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = +3 Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 VVE P+V W D+ G V P++ P F + P KG+L +GPPG GK+ L Sbjct: 471 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 530 Query: 636 AKAVATE 656 AKA+A E Sbjct: 531 AKAIANE 537 Score = 52.0 bits (119), Expect = 3e-07 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653 V + DV G V LP++ P LF + P KGILL+GPPG+GK+ +A+AVA Sbjct: 204 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 263 Query: 654 E 656 E Sbjct: 264 E 264 >At3g53230.1 68416.m05865 cell division cycle protein 48, putative / CDC48, putative very strong similarity to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain Length = 815 Score = 56.8 bits (131), Expect = 1e-08 Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Frame = +3 Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 VVE P+V W D+ G V P++ P F + P KG+L +GPPG GK+ L Sbjct: 472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLL 531 Query: 636 AKAVATE 656 AKA+A E Sbjct: 532 AKAIANE 538 Score = 52.0 bits (119), Expect = 3e-07 Identities = 27/61 (44%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653 V + DV G V LP++ P LF + P KGILL+GPPG+GK+ +A+AVA Sbjct: 205 VGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVAN 264 Query: 654 E 656 E Sbjct: 265 E 265 >At4g24860.1 68417.m03559 AAA-type ATPase family protein contains Pfam profile PF00004: ATPase, AAA family Length = 1122 Score = 56.4 bits (130), Expect = 2e-08 Identities = 32/75 (42%), Positives = 41/75 (54%), Gaps = 2/75 (2%) Frame = +3 Query: 444 LEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPG 617 L I+ V + D+ V+LP++ P LF + P KGILLFGPPG Sbjct: 806 LSDVILPSDIDVTFDDIGALEKVKDILKELVMLPLQRPELFCKGELTKPCKGILLFGPPG 865 Query: 618 TGKSYLAKAVATEAN 662 TGK+ LAKAVA EA+ Sbjct: 866 TGKTMLAKAVAKEAD 880 >At3g01610.1 68416.m00092 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 820 Score = 54.4 bits (125), Expect = 7e-08 Identities = 29/72 (40%), Positives = 39/72 (54%), Gaps = 1/72 (1%) Frame = +3 Query: 447 EGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWK-GILLFGPPGTG 623 EG +V P VKW DV G ++ PIK P ++ + + G LL+GPPG G Sbjct: 517 EGFSIV--PDVKWDDVGGLDHLRLQFNRYIVRPIKKPDIYKAFGVDLETGFLLYGPPGCG 574 Query: 624 KSYLAKAVATEA 659 K+ +AKA A EA Sbjct: 575 KTLIAKAAANEA 586 Score = 38.7 bits (86), Expect = 0.003 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +3 Query: 483 WSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVATEA 659 + D G V+ PI P F + P GIL GPPG GK+ LA A+A EA Sbjct: 232 FKDFGGIKKILDELEMNVLFPILNPEPFKKIGVKPPSGILFHGPPGCGKTKLANAIANEA 291 >At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a) similar to 26S proteasome ATPase subunit GI:1395190 from [Spinacia oleracea] Length = 426 Score = 54.4 bits (125), Expect = 7e-08 Identities = 30/69 (43%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +3 Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 V EKP V ++DV G V LP+ P F I P KG+L +GPPGTGK+ L Sbjct: 159 VEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLL 218 Query: 636 AKAVATEAN 662 A+AVA + Sbjct: 219 ARAVANRTD 227 >At1g62130.1 68414.m07010 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 1025 Score = 54.0 bits (124), Expect = 9e-08 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI--PWKGILLFGPPGTGKSYLAKAVA 650 V + D+ V+LP ++P LF ++ P GILLFGP GTGK+ LAKAVA Sbjct: 732 VTFDDIGALENVKDTLKELVMLPFQWPELFCKGQLTKPCNGILLFGPSGTGKTMLAKAVA 791 Query: 651 TEA 659 TEA Sbjct: 792 TEA 794 >At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3) identical to 26S proteasome AAA-ATPase subunit RPT3 GI:6652882 from [Arabidopsis thaliana] Length = 408 Score = 52.8 bits (121), Expect = 2e-07 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = +3 Query: 465 EKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAK 641 EKP V ++D+ G V LP+ L+ I P +G+LL+GPPGTGK+ LAK Sbjct: 148 EKPDVSYNDIGGCDIQKQEIREAVELPLTHHELYKQIGIDPPRGVLLYGPPGTGKTMLAK 207 Query: 642 AVA 650 AVA Sbjct: 208 AVA 210 >At2g03670.1 68415.m00326 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 603 Score = 52.0 bits (119), Expect = 3e-07 Identities = 32/72 (44%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Frame = +3 Query: 456 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSY 632 I VE P V W DV G V PIK F I P +GILL GPPG K+ Sbjct: 276 ITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISPMRGILLHGPPGCSKTT 335 Query: 633 LAKAVATEANNS 668 LAKA A A S Sbjct: 336 LAKAAANAAQAS 347 Score = 42.3 bits (95), Expect = 3e-04 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = +3 Query: 480 KW---SDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPGTGKSYLAKAV 647 KW +++ G +I P ++P + W +G+LL+GPPGTGK+ L +AV Sbjct: 17 KWRAEAEIGGNERALQALRELIIFPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAV 76 Query: 648 ATEAN 662 E + Sbjct: 77 VQECD 81 >At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, putative identical to SP:O04019 from [Arabidopsis thaliana] Length = 423 Score = 51.6 bits (118), Expect = 5e-07 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +3 Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 V EKP ++D+ G ++LP+ F I P KG+LL+GPPGTGK+ + Sbjct: 161 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKEQFEKLGIRPPKGVLLYGPPGTGKTLM 220 Query: 636 AKAVATEAN 662 A+A A + N Sbjct: 221 ARACAAQTN 229 >At3g56690.1 68416.m06306 calmodulin-binding protein identical to calmodulin-binding protein GI:6760428 from [Arabidopsis thaliana] Length = 1022 Score = 51.2 bits (117), Expect = 6e-07 Identities = 29/70 (41%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Frame = +3 Query: 456 IVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKS 629 +++E P V W DV G V P K F G R P GIL+FGPPG K+ Sbjct: 714 VILEVPKVNWEDVGGQNEVKNQLMEAVEWPQKHQDAFKRIGTRPP-SGILMFGPPGCSKT 772 Query: 630 YLAKAVATEA 659 +A+AVA+EA Sbjct: 773 LMARAVASEA 782 Score = 35.5 bits (78), Expect = 0.032 Identities = 14/23 (60%), Positives = 18/23 (78%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVA 650 P KG+L+ GPPGTGK+ LA+ A Sbjct: 417 PTKGVLIHGPPGTGKTSLARTFA 439 >At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a) identical to GB:AAF22525 GI:6652886 from [Arabidopsis thaliana] Length = 424 Score = 51.2 bits (117), Expect = 6e-07 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +3 Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 V EKP ++D+ G ++LP+ F + P KG+LL+GPPGTGK+ + Sbjct: 162 VDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLM 221 Query: 636 AKAVATEAN 662 A+A A + N Sbjct: 222 ARACAAQTN 230 >At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, putative similar to 26S proteasome AAA-ATPase subunit RPT1 SP:Q41365 from [Spinacia oleracea] Length = 464 Score = 50.4 bits (115), Expect = 1e-06 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 1/65 (1%) Frame = +3 Query: 459 VVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 V EKP +SD+ G V LP+ P F I P KG+L +GPPG+GK+ + Sbjct: 196 VEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLV 255 Query: 636 AKAVA 650 A+AVA Sbjct: 256 ARAVA 260 >At1g06430.1 68414.m00680 FtsH protease, putative similar to zinc dependent protease GI:7650138 from [Arabidopsis thaliana] Length = 685 Score = 50.0 bits (114), Expect = 1e-06 Identities = 32/63 (50%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 650 V + DVAG V +K P FT G RIP KG+LL GPPGTGK+ LAKA+A Sbjct: 217 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGARIP-KGVLLVGPPGTGKTLLAKAIA 274 Query: 651 TEA 659 EA Sbjct: 275 GEA 277 >At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, putative almost identical to 26S proteasome AAA-ATPase subunit RPT6a GI:6652888 from [Arabidopsis thaliana]; almost identical to a member of conserved Sug1 CAD family AtSUG1 GI:13537115 from [Arabidopsis thaliana] Length = 419 Score = 49.6 bits (113), Expect = 2e-06 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = +3 Query: 462 VEK-PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPGTGKSYL 635 VEK P + + G + LPIK P LF I KG+LL+GPPGTGK+ L Sbjct: 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 211 Query: 636 AKAVA 650 A+AVA Sbjct: 212 ARAVA 216 >At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) Length = 419 Score = 49.6 bits (113), Expect = 2e-06 Identities = 29/65 (44%), Positives = 36/65 (55%), Gaps = 2/65 (3%) Frame = +3 Query: 462 VEK-PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPGTGKSYL 635 VEK P + + G + LPIK P LF I KG+LL+GPPGTGK+ L Sbjct: 152 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLL 211 Query: 636 AKAVA 650 A+AVA Sbjct: 212 ARAVA 216 >At2g30950.1 68415.m03775 FtsH protease (VAR2) identical to zinc dependent protease VAR2 GI:7650138 from [Arabidopsis thaliana] Length = 695 Score = 49.2 bits (112), Expect = 2e-06 Identities = 31/63 (49%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 650 V + DVAG V +K P FT G +IP KG+LL GPPGTGK+ LAKA+A Sbjct: 224 VTFDDVAGVDEAKQDFMEVVEF-LKKPERFTAVGAKIP-KGVLLIGPPGTGKTLLAKAIA 281 Query: 651 TEA 659 EA Sbjct: 282 GEA 284 >At1g08270.1 68414.m00913 expressed protein low similarity to SP|P46467 SKD1 protein (Vacuolar sorting protein 4b) {Mus musculus} Length = 126 Score = 49.2 bits (112), Expect = 2e-06 Identities = 36/123 (29%), Positives = 49/123 (39%) Frame = +3 Query: 207 HGVEYFLHAVKYEAQGERAKESIRAKCLQYLDRAXXXXXXXXXXXXXXXXXXXXXXXXXX 386 + +EYF +KYE + R +++I K +YL RA Sbjct: 2 NALEYFKIYLKYE-KNPRIRDAITDKFYEYLRRAEEIRAVLVEVGSGKGSNGDAAVATKP 60 Query: 387 XXXXXXXXXXXXXXXLQGKLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 566 L+ L AI+ EKP+VKW+ VAG VILP+ FP F Sbjct: 61 KTKPKDGGDGEESK-LRAGLNSAIIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119 Query: 567 TGK 575 TGK Sbjct: 120 TGK 122 >At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a) gb|AAF22524.1 Length = 399 Score = 48.8 bits (111), Expect = 3e-06 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 474 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVA 650 ++ +S V G + LP+ P LF I P KG+LL+GPPGTGK+ LA+A+A Sbjct: 135 NISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 194 Query: 651 T 653 + Sbjct: 195 S 195 >At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit p42D, putative similar to 26S proteasome regulatory complex subunit p42D [Drosophila melanogaster] gi|6434958|gb|AAF08391 Length = 399 Score = 48.8 bits (111), Expect = 3e-06 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Frame = +3 Query: 474 HVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVA 650 ++ +S V G + LP+ P LF I P KG+LL+GPPGTGK+ LA+A+A Sbjct: 135 NISYSAVGGLGDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIA 194 Query: 651 T 653 + Sbjct: 195 S 195 >At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a) almost identical to 26S proteasome AAA-ATPase subunit RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila melanogaster 26S proteasome subunit 4 ATPase, PID:g1066065 Length = 443 Score = 48.4 bits (110), Expect = 4e-06 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Frame = +3 Query: 462 VEK-PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 VEK P ++D+ G V LP+ P L+ I P KG++L+G PGTGK+ L Sbjct: 179 VEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 238 Query: 636 AKAVATEAN 662 AKAVA + Sbjct: 239 AKAVANSTS 247 >At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4, putative similar to Swiss-Prot:P48601 26S protease regulatory subunit 4 (P26S4) [Drosophila melanogaster] Length = 443 Score = 48.4 bits (110), Expect = 4e-06 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 2/69 (2%) Frame = +3 Query: 462 VEK-PHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYL 635 VEK P ++D+ G V LP+ P L+ I P KG++L+G PGTGK+ L Sbjct: 179 VEKAPLESYADIGGLEAQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLL 238 Query: 636 AKAVATEAN 662 AKAVA + Sbjct: 239 AKAVANSTS 247 >At1g05910.1 68414.m00620 cell division cycle protein 48-related / CDC48-related similar to SP|P54609 Cell division cycle protein 48 homolog {Arabidopsis thaliana}; contains Pfam profiles PF00004: ATPase AAA family, PF00439: Bromodomain Length = 1210 Score = 47.6 bits (108), Expect = 7e-06 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653 + + D+ G V P+ +P F I P +G+LL GPPGTGK+ +A+A+A Sbjct: 378 INFDDIGGLSEYINDLKEMVFFPLLYPEFFASYSITPPRGVLLCGPPGTGKTLIARALAC 437 Query: 654 EANNS 668 A+ + Sbjct: 438 AASKA 442 >At5g15250.1 68418.m01786 FtsH protease, putative similar to FtsH-like protein Pftf precursor GI:4325041 from [Nicotiana tabacum] Length = 687 Score = 46.8 bits (106), Expect = 1e-05 Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 2/63 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 650 + + DVAG V +K P F+ G +IP KG+LL GPPGTGK+ LAKA+A Sbjct: 220 ITFEDVAGVDEAKQDFEEIVEF-LKTPEKFSALGAKIP-KGVLLTGPPGTGKTLLAKAIA 277 Query: 651 TEA 659 EA Sbjct: 278 GEA 280 >At1g08270.2 68414.m00912 expressed protein low similarity to SP|P46467 SKD1 protein (Vacuolar sorting protein 4b) {Mus musculus} Length = 132 Score = 46.8 bits (106), Expect = 1e-05 Identities = 35/125 (28%), Positives = 49/125 (39%) Frame = +3 Query: 207 HGVEYFLHAVKYEAQGERAKESIRAKCLQYLDRAXXXXXXXXXXXXXXXXXXXXXXXXXX 386 + +EYF +KYE + R +++I K +YL RA Sbjct: 2 NALEYFKIYLKYE-KNPRIRDAITDKFYEYLRRAEEIRAVLVEVGSGKGSNGDAAVATKP 60 Query: 387 XXXXXXXXXXXXXXXLQGKLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLF 566 L+ L AI+ EKP+VKW+ VAG VILP+ FP F Sbjct: 61 KTKPKDGGDGEESK-LRAGLNSAIIREKPNVKWTVVAGLESAKQALKEAVILPVNFPQFF 119 Query: 567 TGKRI 581 T + I Sbjct: 120 TARAI 124 >At1g50250.1 68414.m05634 cell division protein ftsH homolog 1, chloroplast (FTSH1) (FTSH) identical to SP:Q39102 Cell division protein ftsH homolog 1, chloroplast precursor (EC 3.4.24.-) [Arabidopsis thaliana] Length = 716 Score = 46.0 bits (104), Expect = 2e-05 Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 2/68 (2%) Frame = +3 Query: 462 VEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYL 635 V + V ++DVAG V +K P +T G +IP KG LL GPPGTGK+ L Sbjct: 254 VPETGVSFADVAGADQAKLELQEVVDF-LKNPDKYTALGAKIP-KGCLLVGPPGTGKTLL 311 Query: 636 AKAVATEA 659 A+AVA EA Sbjct: 312 ARAVAGEA 319 >At5g42270.1 68418.m05145 FtsH protease, putative similar to FtsH protease GI:13183728 from [Medicago sativa] Length = 704 Score = 45.2 bits (102), Expect = 4e-05 Identities = 31/68 (45%), Positives = 38/68 (55%), Gaps = 2/68 (2%) Frame = +3 Query: 462 VEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYL 635 V + V + DVAG V +K P +T G +IP KG LL GPPGTGK+ L Sbjct: 242 VPETGVTFGDVAGADQAKLELQEVVDF-LKNPDKYTALGAKIP-KGCLLVGPPGTGKTLL 299 Query: 636 AKAVATEA 659 A+AVA EA Sbjct: 300 ARAVAGEA 307 >At2g26140.1 68415.m03137 FtsH protease, putative contains similarity to YME1 GI:295582, a member of the ftsH-SEC18-PAS1-CDC48 family of putative ATPase-encoding genes from [Saccharomyces cerevisiae] Length = 717 Score = 45.2 bits (102), Expect = 4e-05 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 2/62 (3%) Frame = +3 Query: 480 KWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVAT 653 K+SDV G ++ ++ P FT G ++P KG+LL GPPGTGK+ LA+A+A Sbjct: 225 KFSDVKGVDEAKAELEE-IVHYLRDPKRFTRLGGKLP-KGVLLVGPPGTGKTMLARAIAG 282 Query: 654 EA 659 EA Sbjct: 283 EA 284 >At5g53170.1 68418.m06610 FtsH protease, putative similar to ATP-dependent metalloprotease FtsH1 GI:3600100 from [Mus musculus] Length = 806 Score = 43.6 bits (98), Expect = 1e-04 Identities = 32/75 (42%), Positives = 40/75 (53%), Gaps = 2/75 (2%) Frame = +3 Query: 441 KLEGAIVVEKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPP 614 +L I EK + DV G V+ +K P FT G ++P KGILL G P Sbjct: 347 ELNKEITPEKNVKTFKDVKGCDDAKQELEE-VVEYLKNPSKFTRLGGKLP-KGILLTGAP 404 Query: 615 GTGKSYLAKAVATEA 659 GTGK+ LAKA+A EA Sbjct: 405 GTGKTLLAKAIAGEA 419 >At5g64580.1 68418.m08116 AAA-type ATPase family protein similar to zinc dependent protease [Arabidopsis thaliana] GI:7650138; contains Pfam profile PF00004: ATPase AAA family Length = 855 Score = 43.2 bits (97), Expect = 2e-04 Identities = 29/66 (43%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = +3 Query: 465 EKPHVKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPW-KGILLFGPPGTGKSYLAK 641 EK V + D AG V + +K F K I KG+LL GPPGTGK+ LAK Sbjct: 309 EKTGVTFDDFAGQEYIKRELQEIVRI-LKNDEEFQNKGIYCPKGVLLHGPPGTGKTLLAK 367 Query: 642 AVATEA 659 A+A EA Sbjct: 368 AIAGEA 373 >At3g02450.1 68416.m00232 cell division protein ftsH, putative similar to SWISS-PROT:P46469 cell division protein ftsH homolog [Lactococcus lactis]; contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 622 Score = 43.2 bits (97), Expect = 2e-04 Identities = 20/30 (66%), Positives = 25/30 (83%) Frame = +3 Query: 570 GKRIPWKGILLFGPPGTGKSYLAKAVATEA 659 G R+P +G+LL GPPGTGK+ LA+AVA EA Sbjct: 363 GARLP-RGVLLVGPPGTGKTLLARAVAGEA 391 >At5g08470.1 68418.m00999 peroxisome biogenesis protein (PEX1) identical to peroxisome biogenesis protein PEX1 [Arabidopsis thaliana] gi|12006272|gb|AAG44817; contains Pfam profile PF00004: ATPase, AAA family; identical to cDNA peroxisome biogenesis protein PEX1 (PEX1) mRNA, partial cds GI:12006271 Length = 1130 Score = 42.7 bits (96), Expect = 2e-04 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%) Frame = +3 Query: 483 WSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRIPWKG-ILLFGPPGTGKSYLAKAVA 650 W DV G + LP KFP +F + + +LL+GPPG GK+++ A A Sbjct: 843 WEDVGGVTDIKNAIKEMIELPSKFPKIFAKSPLRLRSNVLLYGPPGCGKTHIVGAAA 899 Score = 34.3 bits (75), Expect = 0.074 Identities = 16/30 (53%), Positives = 23/30 (76%), Gaps = 1/30 (3%) Frame = +3 Query: 564 FTGKRIPWKG-ILLFGPPGTGKSYLAKAVA 650 F+ +IP G IL++GPPG+GK+ LA+A A Sbjct: 585 FSKFKIPSPGHILIYGPPGSGKTILARAAA 614 >At4g23940.1 68417.m03443 FtsH protease, putative contains similarity to zinc dependent protease GI:7650138 from [Arabidopsis thaliana] Length = 946 Score = 42.7 bits (96), Expect = 2e-04 Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAVAT 653 VK++DVAG V +K P LF I P G+LL GPPG GK+ +AKA+A Sbjct: 427 VKFADVAGIDEAVDELQELVKY-LKNPDLFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAG 485 Query: 654 EA 659 EA Sbjct: 486 EA 487 >At3g15120.1 68416.m01913 AAA-type ATPase family protein contains PROSITE domains, PS00674: AAA-protein family signature and PS00017: ATP/GTP-binding site motif A (P-loop) Length = 1954 Score = 41.9 bits (94), Expect = 4e-04 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +3 Query: 483 WSDVAGXXXXXXXXXXXVILPIKFPHLFTGKRI-PWKGILLFGPPGTGKSYLAKAV 647 W VAG V++P+ +P F + P +GILL G PGTGK+ + +A+ Sbjct: 718 WDSVAGLEGVTQCMKEVVLIPLLYPEFFDNLGLTPPRGILLHGHPGTGKTLVVRAL 773 >At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-metalloprotease FtsH [Pisum sativum] GI:15021761; contains Pfam profiles PF01434: Peptidase family M41, PF00004: ATPase AAA family Length = 809 Score = 41.1 bits (92), Expect = 6e-04 Identities = 23/39 (58%), Positives = 27/39 (69%) Frame = +3 Query: 543 PIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEA 659 P K+ L G +IP KG LL GPPGTGK+ LAKA A E+ Sbjct: 344 PKKYEDL--GAKIP-KGALLVGPPGTGKTLLAKATAGES 379 >At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-metalloprotease FtsH [Pisum sativum] GI:15021761; contains Pfam profiles PF01434: Peptidase family M41, PF00004: ATPase AAA family Length = 813 Score = 41.1 bits (92), Expect = 6e-04 Identities = 23/39 (58%), Positives = 27/39 (69%) Frame = +3 Query: 543 PIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEA 659 P K+ L G +IP KG LL GPPGTGK+ LAKA A E+ Sbjct: 349 PKKYEDL--GAKIP-KGALLVGPPGTGKTLLAKATAGES 384 >At3g16290.1 68416.m02056 FtsH protease, putative contains similarity to cell division protein FtsH GI:1652085 from [Synechocystis sp. PCC 6803] Length = 876 Score = 39.9 bits (89), Expect = 0.001 Identities = 21/30 (70%), Positives = 23/30 (76%) Frame = +3 Query: 570 GKRIPWKGILLFGPPGTGKSYLAKAVATEA 659 G +IP GILL GPPG GK+ LAKAVA EA Sbjct: 439 GVKIPG-GILLCGPPGVGKTLLAKAVAGEA 467 >At3g28520.1 68416.m03562 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 478 Score = 39.1 bits (87), Expect = 0.003 Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%) Frame = +3 Query: 582 PWK-GILLFGPPGTGKSYLAKAVA 650 PWK G LLFGPPGTGKS + A+A Sbjct: 226 PWKRGYLLFGPPGTGKSTMISAIA 249 >At3g47060.1 68416.m05110 FtsH protease, putative contains similarity to FtsH protease GI:13183728 from [Medicago sativa] Length = 802 Score = 38.7 bits (86), Expect = 0.003 Identities = 23/39 (58%), Positives = 27/39 (69%) Frame = +3 Query: 543 PIKFPHLFTGKRIPWKGILLFGPPGTGKSYLAKAVATEA 659 P K+ L G R P +G+LL G PGTGK+ LAKAVA EA Sbjct: 347 PEKYVRL--GARPP-RGVLLVGLPGTGKTLLAKAVAGEA 382 >At3g28510.1 68416.m03561 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family Length = 530 Score = 38.7 bits (86), Expect = 0.003 Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%) Frame = +3 Query: 582 PWK-GILLFGPPGTGKSYLAKAVA 650 PWK G LLFGPPGTGKS + A+A Sbjct: 241 PWKRGYLLFGPPGTGKSTMIAAIA 264 >At3g28540.1 68416.m03564 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 510 Score = 38.3 bits (85), Expect = 0.005 Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%) Frame = +3 Query: 582 PWK-GILLFGPPGTGKSYLAKAVA 650 PWK G LLFGPPGTGKS + A+A Sbjct: 237 PWKRGYLLFGPPGTGKSTMISAMA 260 >At5g58870.1 68418.m07376 FtsH protease, putative contains similarity to cell division protein FtsH homolog 3 SP:P73437 (EC 3.4.24.-) [strain PCC6803] {Synechocystis sp.} Length = 806 Score = 37.9 bits (84), Expect = 0.006 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT--GKRIPWKGILLFGPPGTGKSYLAKAVA 650 + ++DVAG V +K P + G R P +G+LL G PGTGK+ LAKAVA Sbjct: 326 ITFADVAGVDEAKEELEEIVEF-LKNPDRYVRLGARPP-RGVLLVGLPGTGKTLLAKAVA 383 Query: 651 TEAN 662 E++ Sbjct: 384 GESD 387 >At5g17730.1 68418.m02079 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 470 Score = 37.5 bits (83), Expect = 0.008 Identities = 16/24 (66%), Positives = 19/24 (79%), Gaps = 1/24 (4%) Frame = +3 Query: 582 PWK-GILLFGPPGTGKSYLAKAVA 650 PWK G LL+GPPGTGK+ L A+A Sbjct: 243 PWKRGYLLYGPPGTGKTSLVAAIA 266 >At4g05380.1 68417.m00820 AAA-type ATPase family protein contains similarity to mitochondrial ATPase (AAA family) Bcs1p, Saccharomyces cerevisiae, Swiss Prot:P32839 Length = 248 Score = 37.5 bits (83), Expect = 0.008 Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVATEANNS 668 WK G LL+GPPGTGKS L A+A N S Sbjct: 30 WKRGYLLYGPPGTGKSSLVAAIANFMNYS 58 >At3g50940.1 68416.m05577 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 451 Score = 37.5 bits (83), Expect = 0.008 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVATEAN 662 WK G LL+GPPGTGKS L A+A N Sbjct: 246 WKRGYLLYGPPGTGKSSLIAAIANHLN 272 >At3g50930.1 68416.m05576 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 576 Score = 36.7 bits (81), Expect = 0.014 Identities = 17/27 (62%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVATEAN 662 WK G LL+GPPGTGKS L A+A N Sbjct: 298 WKRGYLLYGPPGTGKSSLIAAMANHLN 324 >At4g04910.1 68417.m00714 AAA-type ATPase family protein similar to SP|P18708 Vesicular-fusion protein NSF (N-ethylmaleimide-sensitive fusion protein) (NEM-sensitive fusion protein) {Cricetulus griseus}; contains Pfam profiles PF00004: ATPase AAA family, PF02359: Cell division protein 48 (CDC48) N-terminal domain; contains non-consensus AT-AC splice sites at intron 2 Length = 742 Score = 36.3 bits (80), Expect = 0.018 Identities = 14/25 (56%), Positives = 19/25 (76%) Frame = +3 Query: 588 KGILLFGPPGTGKSYLAKAVATEAN 662 KG+LLFGPPGTGK+ +A+ + N Sbjct: 251 KGMLLFGPPGTGKTLMARQIGKMLN 275 >At3g28610.1 68416.m03571 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 473 Score = 35.5 bits (78), Expect = 0.032 Identities = 17/29 (58%), Positives = 20/29 (68%), Gaps = 1/29 (3%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVATEANNS 668 WK G LL+GPPGTGKS + A+A N S Sbjct: 235 WKRGYLLYGPPGTGKSTMIAAMANLLNYS 263 >At5g40010.1 68418.m04852 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 514 Score = 35.1 bits (77), Expect = 0.043 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LLFGPPGTGKS + A+A Sbjct: 242 WKRGYLLFGPPGTGKSTMIAAMA 264 >At5g40000.1 68418.m04851 AAA-type ATPase family protein BCS1 nuclear gene encoding mitochondrial protein - Homo sapiens, EMBL:AF026849 contains Pfam profile: ATPase family PF00004 Length = 470 Score = 35.1 bits (77), Expect = 0.043 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVATEAN 662 WK G LL+GPPGTGKS + A+A N Sbjct: 240 WKRGYLLYGPPGTGKSTMISAMANLLN 266 >At5g17760.2 68418.m02083 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 341 Score = 35.1 bits (77), Expect = 0.043 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS L A+A Sbjct: 252 WKRGYLLYGPPGTGKSSLVAAMA 274 >At5g17760.1 68418.m02082 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 505 Score = 35.1 bits (77), Expect = 0.043 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS L A+A Sbjct: 252 WKRGYLLYGPPGTGKSSLVAAMA 274 >At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849 contains Pfam profile: ATPase family PF00004 gene_id:K17E7.100 contains Pfam profile: ATPase family PF00004 Length = 533 Score = 35.1 bits (77), Expect = 0.043 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS L A+A Sbjct: 244 WKRGYLLYGPPGTGKSSLVAAMA 266 >At3g28600.1 68416.m03570 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 475 Score = 35.1 bits (77), Expect = 0.043 Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVATEANNS 668 WK G LL GPPGTGKS + A+A N S Sbjct: 235 WKRGYLLHGPPGTGKSTMIAAMANHLNYS 263 >At3g28580.1 68416.m03568 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 500 Score = 35.1 bits (77), Expect = 0.043 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LLFGPPGTGKS + A+A Sbjct: 239 WKRGYLLFGPPGTGKSTMIAAMA 261 >At1g43910.1 68414.m05066 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 475 Score = 35.1 bits (77), Expect = 0.043 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS + A+A Sbjct: 238 WKRGYLLYGPPGTGKSSMVAAIA 260 >At4g30250.1 68417.m04301 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 512 Score = 34.7 bits (76), Expect = 0.056 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS L A+A Sbjct: 237 WKRGYLLYGPPGTGKSSLIAAMA 259 >At2g18193.1 68415.m02117 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 495 Score = 34.7 bits (76), Expect = 0.056 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS L A+A Sbjct: 242 WKRGYLLYGPPGTGKSSLIAAMA 264 >At2g18190.1 68415.m02116 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 494 Score = 34.7 bits (76), Expect = 0.056 Identities = 16/23 (69%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS L A+A Sbjct: 243 WKRGYLLYGPPGTGKSSLIAAMA 265 >At1g79560.1 68414.m09275 FtsH protease, putative contains similarity to chloroplast FtsH protease GI:5804782 from [Nicotiana tabacum] Length = 1008 Score = 34.3 bits (75), Expect = 0.074 Identities = 13/24 (54%), Positives = 19/24 (79%) Frame = +3 Query: 588 KGILLFGPPGTGKSYLAKAVATEA 659 +G+LL GPPGTGK+ A+ +A E+ Sbjct: 527 RGVLLSGPPGTGKTLFARTLAKES 550 >At5g57480.1 68418.m07183 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family Length = 520 Score = 33.9 bits (74), Expect = 0.098 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS + A+A Sbjct: 236 WKRGYLLYGPPGTGKSSMIAAMA 258 >At4g25835.1 68417.m03716 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family Length = 506 Score = 33.9 bits (74), Expect = 0.098 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS + A+A Sbjct: 236 WKRGYLLYGPPGTGKSSMIAAMA 258 >At3g28570.1 68416.m03567 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 451 Score = 33.9 bits (74), Expect = 0.098 Identities = 15/23 (65%), Positives = 18/23 (78%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK G LL+GPPGTGKS + A+A Sbjct: 235 WKRGYLLYGPPGTGKSTMIAAMA 257 >At5g22330.1 68418.m02605 TATA box-binding protein-interacting protein-related similar to TATA box-binding protein-interacting protein SP:O35753 from [ Mus musculus] Length = 458 Score = 33.5 bits (73), Expect = 0.13 Identities = 14/28 (50%), Positives = 20/28 (71%) Frame = +3 Query: 573 KRIPWKGILLFGPPGTGKSYLAKAVATE 656 K++ K +LL GPPGTGK+ LA ++ E Sbjct: 62 KKMAGKALLLAGPPGTGKTALALGISQE 89 >At3g03060.1 68416.m00302 AAA-type ATPase family protein contains a ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017 Length = 639 Score = 33.5 bits (73), Expect = 0.13 Identities = 13/26 (50%), Positives = 20/26 (76%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVATEA 659 P++ ILL GPPGTGK+ A+ +A ++ Sbjct: 396 PFRNILLHGPPGTGKTMAARELARKS 421 >At2g18330.1 68415.m02136 AAA-type ATPase family protein contains Pfam profile: PF00004 ATPase family associated with various cellular activities (AAA) Length = 636 Score = 33.5 bits (73), Expect = 0.13 Identities = 10/28 (35%), Positives = 22/28 (78%) Frame = +3 Query: 576 RIPWKGILLFGPPGTGKSYLAKAVATEA 659 + P++ ++ +GPPGTGK+ +A+ +A ++ Sbjct: 382 KAPFRNMMFYGPPGTGKTMVAREIARKS 409 >At5g16930.1 68418.m01984 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 644 Score = 33.1 bits (72), Expect = 0.17 Identities = 12/23 (52%), Positives = 18/23 (78%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVA 650 P++ IL +GPPGTGK+ A+ +A Sbjct: 397 PFRNILFYGPPGTGKTMAARELA 419 >At4g36580.1 68417.m05193 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 620 Score = 33.1 bits (72), Expect = 0.17 Identities = 10/26 (38%), Positives = 21/26 (80%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVATEA 659 P++ ++ +GPPGTGK+ +A+ +A ++ Sbjct: 369 PFRNMMFYGPPGTGKTMVAREIARKS 394 >At4g24710.1 68417.m03536 AAA-type ATPase family protein similar to HPV16 E1 protein binding protein [Homo sapiens] gi|2232019|gb|AAB64095; contains Pfam domain, PF00004: ATPase, AAA family ('A'TPases 'A'ssociated with diverse cellular 'A'ctivities) Length = 467 Score = 33.1 bits (72), Expect = 0.17 Identities = 18/32 (56%), Positives = 22/32 (68%) Frame = +3 Query: 555 PHLFTGKRIPWKGILLFGPPGTGKSYLAKAVA 650 P+L + RI ILL GPPGTGK+ L KA+A Sbjct: 196 PNLVSWNRI----ILLHGPPGTGKTSLCKALA 223 >At3g04340.1 68416.m00459 FtsH protease family protein similar to chloroplast FtsH protease [Arabidopsis thaliana] GI:1483215; contains Pfam profiles PF01434: Peptidase family M41, PF00004: ATPase AAA family Length = 960 Score = 32.7 bits (71), Expect = 0.23 Identities = 16/30 (53%), Positives = 21/30 (70%) Frame = +3 Query: 570 GKRIPWKGILLFGPPGTGKSYLAKAVATEA 659 G R P +G+L+ G GTGK+ LA A+A EA Sbjct: 453 GARAP-RGVLIVGERGTGKTSLALAIAAEA 481 >At4g04180.1 68417.m00593 AAA-type ATPase family protein contains Pfam domain, PF00004: ATPase, AAA family Length = 609 Score = 31.9 bits (69), Expect = 0.40 Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 9/70 (12%) Frame = +3 Query: 477 VKWSDVAGXXXXXXXXXXXVILPIKFPHLFT----GKRIPW-----KGILLFGPPGTGKS 629 + W ++AG +++ + P ++ G R + + +L GPPGTGK+ Sbjct: 316 ISWDNIAGYDQQKREIEDTILMALHSPEVYDDIVRGTRSKFESNRPRAVLFEGPPGTGKT 375 Query: 630 YLAKAVATEA 659 A+ +A +A Sbjct: 376 SCARVIANQA 385 >At5g17750.1 68418.m02081 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 392 Score = 31.1 bits (67), Expect = 0.69 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK L+GPPGTGKS L A+A Sbjct: 219 WKRSYFLYGPPGTGKSSLVAAMA 241 >At1g67120.1 68414.m07636 midasin-related similar to Midasin (MIDAS-containing protein) (Swiss-Prot:Q12019) [Saccharomyces cerevisiae]; similar to Midasin (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo sapiens]; contains Prosite PS00017: ATP/GTP-binding site motif A (P-loop) Length = 5336 Score = 30.7 bits (66), Expect = 0.92 Identities = 12/24 (50%), Positives = 18/24 (75%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVATEANN 665 +LL+GP G+GKS L + +A E+ N Sbjct: 356 VLLYGPSGSGKSALIRKLADESGN 379 >At3g30842.1 68416.m03968 ABC transporter protein, putative similar to pleiotropic drug resistance like protein [Nicotiana tabacum] GI:20522008, ABC1 protein [Nicotiana plumbaginifolia] GI:14331118; contains Pfam profile PF00005: ABC transporter Length = 1406 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/23 (56%), Positives = 17/23 (73%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVA 650 P + LL GPPG+GKS L KA++ Sbjct: 171 PGRLTLLLGPPGSGKSTLLKALS 193 >At2g29940.1 68415.m03642 ABC transporter family protein similar to ABC1 protein GI:14331118 from [Nicotiana plumbaginifolia] Length = 1426 Score = 29.9 bits (64), Expect = 1.6 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVATEANNS 668 P + LL GPPG+GKS L A+A + + S Sbjct: 185 PGRMTLLLGPPGSGKSTLLLALAGKLDKS 213 >At2g37280.1 68415.m04573 ABC transporter family protein similar to PDR5-like ABC transporter GI:1514643 from [Spirodela polyrhiza] Length = 1413 Score = 29.5 bits (63), Expect = 2.1 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVATEANNS 668 P + LL GPPG GK+ L KA++ N+ Sbjct: 164 PGRLTLLLGPPGCGKTTLLKALSGNLENN 192 >At2g19120.1 68415.m02232 tRNA-splicing endonuclease positive effector-related similar to Endonuclease sen1 (Swiss-Prot:Q92355) [Schizosaccharomyces pombe]; similar to tRNA-splicing endonuclease positive effector (Swiss-Prot:Q00416) [Saccharomyces cerevisiae] Length = 1090 Score = 29.5 bits (63), Expect = 2.1 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +3 Query: 573 KRIPWKGILLFGPPGTGKSY 632 K+ PW L+ GPPGTGK++ Sbjct: 491 KQEPWPFTLVQGPPGTGKTH 510 >At5g53350.1 68418.m06630 ATP-dependent Clp protease ATP-binding subunit ClpX1 (CLPX) identical to CLP protease regulatory subunit CLPX GI:2674203 from [Arabidopsis thaliana] Length = 579 Score = 29.1 bits (62), Expect = 2.8 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVATEAN 662 ILL GP G+GK+ LAK +A N Sbjct: 226 ILLMGPTGSGKTLLAKTLARFVN 248 >At1g77470.1 68414.m09021 replication factor C 36 kDA, putative similar to SWISS-PROT:P40937 activator 1 36 kDa subunit (Replication factor C 36 kDa subunit, A1 36 kDa subunit, RF-C 36 kDa subunit, RFC36) [Homo sapiens] Length = 369 Score = 29.1 bits (62), Expect = 2.8 Identities = 12/19 (63%), Positives = 15/19 (78%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVA 650 +LL+GPPGTGK+ AVA Sbjct: 75 LLLYGPPGTGKTSTILAVA 93 >At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to Werner helicase interacting protein [Homo sapiens] GI:14349166; contains Pfam profiles PF00004: ATPase family associated with various cellular activities (AAA), PF00627: UBA/TS-N domain; contains ATP/GTP-binding site motif A (P-loop) Length = 525 Score = 29.1 bits (62), Expect = 2.8 Identities = 12/30 (40%), Positives = 21/30 (70%) Frame = +3 Query: 576 RIPWKGILLFGPPGTGKSYLAKAVATEANN 665 R+P I+ +GPPGTGK+ +AK++ + + Sbjct: 136 RLP--SIVFWGPPGTGKTSIAKSLINSSKD 163 >At5g61510.1 68418.m07718 NADP-dependent oxidoreductase, putative similar to zeta-crystallin homolog TED2 from Zinnia elegans [gi:531096]; contains Pfam zinc-binding dehydrogenase domain PF00107 Length = 406 Score = 28.7 bits (61), Expect = 3.7 Identities = 19/61 (31%), Positives = 28/61 (45%) Frame = +3 Query: 102 TMTSSNTLQKAIDLVTKATEEDKNKNYEEALRLYEHGVEYFLHAVKYEAQGERAKESIRA 281 ++++ T+ L T A EE K + +R+YEHG L E GE + IR Sbjct: 57 SLSTRGTVFAVRALSTVAVEESSEKKMVKGIRVYEHGGPEVLKWEDVEV-GEPKEGEIRV 115 Query: 282 K 284 K Sbjct: 116 K 116 >At5g49840.1 68418.m06172 ATP-dependent Clp protease ATP-binding subunit ClpX, putative similar to CLP protease regulatory subunit CLPX GI:2674203 from [Arabidopsis thaliana]; non-consensus splice donor GC at exon 4; non-consensus splice donor AA at exon 7 Length = 606 Score = 28.7 bits (61), Expect = 3.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVATEAN 662 +LL GP G+GK+ LAK +A N Sbjct: 265 VLLLGPTGSGKTLLAKTLARIVN 287 >At1g33360.1 68414.m04129 ATP-dependent Clp protease ATP-binding subunit ClpX, putative similar to CLP protease regulatory subunit CLPX GI:2674203 from [Arabidopsis thaliana] Length = 656 Score = 28.7 bits (61), Expect = 3.7 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVATEAN 662 +LL GP G+GK+ LAK +A N Sbjct: 311 VLLMGPTGSGKTLLAKTLARLVN 333 >At1g21690.2 68414.m02715 replication factor C 37 kDa, putative Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains Pfam domain, PF00004: ATPase, AAA family Length = 327 Score = 28.7 bits (61), Expect = 3.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVA 650 +L +GPPGTGK+ A A+A Sbjct: 33 MLFYGPPGTGKTTTALAIA 51 >At1g21690.1 68414.m02714 replication factor C 37 kDa, putative Similar to SWISS-PROT:P35249 activator 1 37 kDa subunit (Replication factor C 37 kDa subunit, A1 37 kDa subunit, RF-C 37 kDa subunit, RFC37) [Homo sapiens]; contains Pfam domain, PF00004: ATPase, AAA family Length = 339 Score = 28.7 bits (61), Expect = 3.7 Identities = 11/19 (57%), Positives = 15/19 (78%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVA 650 +L +GPPGTGK+ A A+A Sbjct: 45 MLFYGPPGTGKTTTALAIA 63 >At4g30100.1 68417.m04280 tRNA-splicing endonuclease positive effector-related contains similarity to SEN1, a positive effector of tRNA-splicing endonuclease [Saccharomyces cerevisiae] gi|172574|gb|AAB63976 Length = 1311 Score = 28.3 bits (60), Expect = 4.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSY 632 PW L+ GPPGTGK++ Sbjct: 658 PWPFTLVQGPPGTGKTH 674 >At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to nuclear protein ZAP, Mus musculus, EMBL:AB033168 this cDNA provides a truncated ORF likely due to a skipped exon. An alternative ORF is provided. Length = 383 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAK 641 I+L G PG+GKSYLAK Sbjct: 279 IILRGLPGSGKSYLAK 294 >At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to nuclear protein ZAP, Mus musculus, EMBL:AB033168 this cDNA provides a truncated ORF likely due to a skipped exon. An alternative ORF is provided. Length = 661 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/16 (75%), Positives = 14/16 (87%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAK 641 I+L G PG+GKSYLAK Sbjct: 279 IILRGLPGSGKSYLAK 294 >At4g15230.1 68417.m02333 ABC transporter family protein similar to pleiotropic drug resistance like protein [Nicotiana tabacum] GI:20522008, PDR5-like ABC transporter [Spirodela polyrhiza] GI:1514643; contains Pfam profile PF00005: ABC transporter Length = 1326 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVATEANNS 668 P + LL GPPG GK+ L +A++ + ++S Sbjct: 166 PGRMTLLLGPPGCGKTTLLQALSGKFSDS 194 >At4g15215.1 68417.m02332 ABC transporter family protein similar to PDR5-like ABC transporter [Spirodela polyrhiza] GI:1514643; contains Pfam profile PF00005: ABC transporter Length = 1390 Score = 27.9 bits (59), Expect = 6.5 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVATEANNS 668 P + LL GPPG GK+ L +A++ ++S Sbjct: 163 PGRMTLLLGPPGCGKTTLLQALSGRLSHS 191 >At3g60160.1 68416.m06717 ABC transporter family protein similar to ATP-binding cassette transporter MRP8 GI:18031899 from [Arabidopsis thaliana] Length = 1490 Score = 27.9 bits (59), Expect = 6.5 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 8/61 (13%) Frame = -2 Query: 375 FWIPHPLLVFSFDLF*DI----PLIFQLYQDIEGILHECFLLPFHL----GPHILLHEEN 220 +W+ +L FSFD PL FQ Y D+ G+L FLL + G H+L N Sbjct: 154 WWLCSFILSFSFDAHFITAKHEPLEFQDYADLTGLLASLFLLAVSIRGKTGFHLLESSGN 213 Query: 219 T 217 T Sbjct: 214 T 214 >At2g46620.1 68415.m05815 AAA-type ATPase family protein contains Pfam profile: ATPase family PF00004 Length = 491 Score = 27.9 bits (59), Expect = 6.5 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%) Frame = +3 Query: 585 WK-GILLFGPPGTGKSYLAKAVA 650 WK LL+GP GTGKS A+A Sbjct: 230 WKRSYLLYGPSGTGKSSFVAAMA 252 >At1g10920.1 68414.m01254 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Length = 727 Score = 27.9 bits (59), Expect = 6.5 Identities = 10/32 (31%), Positives = 16/32 (50%) Frame = +1 Query: 553 FHICLLAREYHGRASYYLDPLVLVSHTWQRLW 648 FH ++ R + G A ++ H WQR+W Sbjct: 81 FHHDMVQRHFDGFAWVFVSQQFTQKHVWQRIW 112 >At5g60340.1 68418.m07564 maoC-like dehydratase domain-containing protein contains similarity to (R)-specific enoyl-CoA hydratase PhaJ1 [Pseudomonas oleovorans] gi|22506675|gb|AAM97601; contains Pfam domain PF01575: MaoC like domain Length = 337 Score = 27.5 bits (58), Expect = 8.5 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVATEAN 662 +L+ G PGTGKS A A+A N Sbjct: 16 LLITGTPGTGKSTTASALAEATN 38 >At4g14670.1 68417.m02255 heat shock protein 101, putative / HSP101, putative similar to heat shock protein 101 GI:6715468 GB:AAF26423 from [Arabidopsis thaliana] Length = 623 Score = 27.5 bits (58), Expect = 8.5 Identities = 13/29 (44%), Positives = 17/29 (58%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVATEANNS 668 P L GP G GK+ LAKA+A + +S Sbjct: 563 PSGSFLFLGPTGVGKTELAKALAEQLFDS 591 >At1g74310.1 68414.m08605 heat shock protein 101 (HSP101) identical to heat shock protein 101 GI:6715468 GB:AAF26423 from [Arabidopsis thaliana] Length = 911 Score = 27.5 bits (58), Expect = 8.5 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = +3 Query: 582 PWKGILLFGPPGTGKSYLAKAVATE 656 P L GP G GK+ LAKA+A + Sbjct: 598 PTGSFLFLGPTGVGKTELAKALAEQ 622 >At1g73170.1 68414.m08466 expressed protein Length = 666 Score = 27.5 bits (58), Expect = 8.5 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = +3 Query: 594 ILLFGPPGTGKSYLAKAVATEANN 665 +LL GPPG GK+ + + VA N Sbjct: 200 LLLIGPPGVGKTTMIREVARMLGN 223 >At1g71960.1 68414.m08318 ABC transporter family protein similar to breast cancer resistance protein GB:AAC97367 from [Homo sapiens] Length = 662 Score = 27.5 bits (58), Expect = 8.5 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +3 Query: 567 TGKRIPWKGILLFGPPGTGKSYLAKAVATEANNS 668 TG P + + + GP G+GKS L AVA + S Sbjct: 88 TGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGS 121 >At1g53600.1 68414.m06090 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 839 Score = 27.5 bits (58), Expect = 8.5 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -2 Query: 417 DHQNHCHYHSSYHH 376 D NH H+H+ YHH Sbjct: 765 DSDNHRHHHAGYHH 778 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,148,732 Number of Sequences: 28952 Number of extensions: 209510 Number of successful extensions: 911 Number of sequences better than 10.0: 115 Number of HSP's better than 10.0 without gapping: 823 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 886 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1412971776 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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