Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30136
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0572 + 11667455-11670783,11672026-11672419                       31   1.0  
02_01_0053 + 397406-397609,398483-398561,398648-398742,399289-39...    30   1.8  
02_01_0589 - 4355207-4355410,4355574-4355747,4356234-4356344,435...    29   5.5  
09_06_0252 + 21867179-21867283,21868362-21868526,21868621-218687...    28   7.2  
06_02_0263 - 13566621-13569875                                         28   9.6  

>02_02_0572 + 11667455-11670783,11672026-11672419
          Length = 1240

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -1

Query: 566  HDIIVTSFYVVSKVQ-LGPEWLWFFCC-WARTIKSCHMASHRESIRIGLMYDHHHSIKSA 393
            H++++T+   + +V  + P+WL      + ++     M+  +   RI  +YD +H   S 
Sbjct: 1174 HELVMTTKEYMREVTVIDPKWLTELAPRFYKSADPTKMSKRKRQERIEPLYDRYHEPNSW 1233

Query: 392  RLGKRR 375
            RL KRR
Sbjct: 1234 RLSKRR 1239


>02_01_0053 +
           397406-397609,398483-398561,398648-398742,399289-399393,
           399496-399575,399832-399922,400021-400128,400529-400615,
           400862-400972
          Length = 319

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 367 YIVLLFPSRALLIEWW-WSYINPILMLSRCDAMWHDFI 477
           Y+ LLFPS  LL+ WW W    P L +    A W  F+
Sbjct: 131 YMFLLFPSILLLLRWWIWDGCLPALAVQMYQA-WLLFL 167


>02_01_0589 -
           4355207-4355410,4355574-4355747,4356234-4356344,
           4356506-4356712,4357609-4357716,4358442-4358698,
           4359120-4359241,4359782-4360001,4360877-4361130,
           4361782-4362015,4362143-4362189
          Length = 645

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 364 LYIVLLFPSRALLIEWWWSYINPILMLSR 450
           L+++LLF +R L  ++W+SY N +    R
Sbjct: 47  LHLLLLFAARGLTYQFWFSYGNMLFFTRR 75


>09_06_0252 +
           21867179-21867283,21868362-21868526,21868621-21868730,
           21868802-21868904,21868998-21869110,21869204-21869357,
           21869476-21870633
          Length = 635

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +3

Query: 339 CSCFWIHRIIYSS 377
           C+CFW  R+IYSS
Sbjct: 619 CACFWFTRLIYSS 631


>06_02_0263 - 13566621-13569875
          Length = 1084

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -1

Query: 566  HDIIVTSF-YVVSKVQLGPEWLWFFCC-WARTIKSCHMASHRESIRIGLMYDHHHSIKSA 393
            H++++T+  Y+     + P WL      + R+     ++  +   RI  +YD ++   S 
Sbjct: 1018 HEVVMTTKEYMREVTAIDPRWLVELAPRFYRSADPTKISKRKRQERIEPLYDRYNEPNSW 1077

Query: 392  RLGKRR 375
            RL KRR
Sbjct: 1078 RLSKRR 1083


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,168
Number of Sequences: 37544
Number of extensions: 309131
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)