Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30136
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si...    31   0.65 
At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04...    28   6.0  
At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein ...    28   6.0  
At5g52990.1 68418.m06581 vesicle-associated membrane protein-rel...    28   8.0  

>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative similar
            to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
            HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
            profiles PF04408: Helicase associated domain (HA2),
            PF00271: Helicase conserved C-terminal domain, PF00575:
            S1 RNA binding domain
          Length = 1168

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = -1

Query: 566  HDIIVTSFYVVSKVQ-LGPEWLWFFCC-WARTIKSCHMASHRESIRIGLMYDHHHSIKSA 393
            HD+++T+   + +V  + P+WL      + +      M+  +   RI  +YD +H   S 
Sbjct: 1102 HDLVMTTKEYMREVTVIDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYDRYHEPNSW 1161

Query: 392  RLGKRR 375
            RL KRR
Sbjct: 1162 RLSKRR 1167


>At5g37920.1 68418.m04568 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577)); common family
           comprised of  At5g37410, At5g37400, At5g37920,
           At5g37460, At5g37650, At5g37470, At5g37420, At5g37430 
           contains Pfam PF04510 : Family of unknown function
           (DUF577)
          Length = 609

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -3

Query: 672 IAHKLVGKVRELFIRESNADDI------FYYLVKMKLEWVGTRHNSYV 547
           IAHK++  +REL  RE     +         +VK +LEW  T    +V
Sbjct: 511 IAHKMIDSIRELVEREMEVGIVRRAFRDMESIVKKQLEWYSTSQYKFV 558


>At1g02040.1 68414.m00124 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 324

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -1

Query: 473 KSCHMASHRESIRIGLMYDHHHSI 402
           K CH  +    +R+  ++DHHHS+
Sbjct: 244 KRCHWLTPSNYLRMTSLHDHHHSV 267


>At5g52990.1 68418.m06581 vesicle-associated membrane
           protein-related contains weak similarity to
           vesicle-associated membrane protein 722 (AtVAMP722)
           (Synaptobrevin- related protein 1) (Swiss-Prot:P47192)
           [Arabidopsis thaliana]
          Length = 272

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 449 RESIRIGLMYDHHHSIKSARLGKR 378
           R+ +R GL+ DHHH  K+ ++ K+
Sbjct: 217 RKELRNGLLSDHHHRQKAKQIWKK 240


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,456,220
Number of Sequences: 28952
Number of extensions: 271434
Number of successful extensions: 508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)