Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30135
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   1.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.2  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    26   6.8  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    26   6.8  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    25   9.0  

>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +2

Query: 293 ETINELLNTSTANSLIRR*IY*CYGTHSIAYFMMSVKLMR 412
           + ++ELLN S++N +    +Y  Y T++  +FM S   +R
Sbjct: 8   DLLDELLNDSSSNMIWLYEVYMLYKTYTSYFFMSSKSFVR 47


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 163  LKRRYAD*KEVI*FKCAQVNFAVKSRSRSLCCAIACST 50
            L RRY    EV+ F+C Q+   + +R+ SL   + C T
Sbjct: 1232 LNRRYRQIVEVL-FRCGQLTVVIATRTLSLGINMPCRT 1268


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +2

Query: 110 LRTLELY-YFF--SISIPSF*YKYMAGMCLGNNYSS 208
           L++ E Y  FF  SI IP F +KY     LG N SS
Sbjct: 15  LKSTEEYDQFFCPSIDIPKFLFKYWDSKPLGKNVSS 50


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 727 FHNCFKLKRGPLPCTTLTQCLRT 659
           F NCFK+K   L    + +CL T
Sbjct: 5   FRNCFKIKNSRLIYDNINKCLLT 27


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +3

Query: 513 NFHQALARGPRSLRKGVAPDTAEACALRNR*PTATDSYVPCPLVDIPQNVLK 668
           +F   L +   SL K V+   AE     +   +A++SYV   LVD P ++LK
Sbjct: 714 SFSSGLKKAFGSLFKNVSGLPAETEIAYHHTLSASNSYVFTDLVDNPDSMLK 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,001,511
Number of Sequences: 5004
Number of extensions: 58641
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)