Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30135
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842...    29   4.1  
04_04_0706 + 27419215-27419371,27419521-27419734,27419818-274199...    28   7.1  
03_05_1012 + 29670310-29670512,29670856-29671001,29671169-296712...    28   9.4  
03_01_0136 + 1069136-1069292,1070783-1071060,1071246-1071602,107...    28   9.4  

>05_04_0210 +
           19082778-19082940,19083806-19083875,19084172-19084295,
           19084442-19084897
          Length = 270

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 659 VLRDVDQWARYVRVCGSGSTVPQGASLGRVWRNTLT 552
           ++R + Q AR    CG  +   Q  S+GR WR T++
Sbjct: 163 IIRQLRQVARQSGCCGRSTWSHQSHSVGRFWRATVS 198


>04_04_0706 +
           27419215-27419371,27419521-27419734,27419818-27419913,
           27420006-27420123,27420211-27420384,27420633-27420803,
           27420932-27420987,27421125-27421214,27421296-27421444,
           27421640-27421722,27421830-27421958,27422063-27422137,
           27422248-27422416,27422965-27423104,27423191-27423298,
           27423603-27423783,27424445-27424542,27424639-27424728,
           27424881-27425034,27425376-27425431,27425483-27425533,
           27425651-27425732,27425821-27425995,27426748-27426823,
           27426951-27427121,27427198-27427269,27427350-27427454,
           27427948-27428037,27428703-27428908,27428989-27429190,
           27429294-27429473,27429858-27429925,27430005-27430341,
           27430428-27430637,27430765-27431448,27431537-27431940,
           27432495-27432542,27432777-27433023,27433381-27433602,
           27433796-27434026
          Length = 2122

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 630 PCPLVDIPQNVLKHCVNVVHGNGPR 704
           P  L+ +  ++L +C+N++H  GP+
Sbjct: 540 PVSLLKVYDDLLANCINIIHKGGPK 564


>03_05_1012 +
           29670310-29670512,29670856-29671001,29671169-29671245,
           29671329-29671451,29671558-29671660,29672100-29672173,
           29672249-29672329,29672411-29672563,29672780-29672881
          Length = 353

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/64 (28%), Positives = 31/64 (48%)
 Frame = +2

Query: 431 NVVKDRTVQ*LARKKIAVSSERSMKQSQLSPGLSARSAVFT*GCCARHGRGLRPAEPLTH 610
           N+++D+ V+   +  I VS+ R++ +      LS      +  C AR   GL P   ++H
Sbjct: 278 NILEDKCVKAAPKPTIDVSASRALLEEYSR--LSKPPIRPSMDCAARQETGLMPKASVSH 335

Query: 611 CHRL 622
           C  L
Sbjct: 336 CRWL 339


>03_01_0136 +
           1069136-1069292,1070783-1071060,1071246-1071602,
           1071706-1072119,1072221-1072302,1072429-1073093
          Length = 650

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 119 VCASEFCREEQVKVSVLCNRLQHALTVESLRFQ-FP 15
           V A+  C   +V V++ C RLQH LT+  L  + FP
Sbjct: 254 VSANFSCLPSKVDVALECARLQHRLTLPPLEVEDFP 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,757,730
Number of Sequences: 37544
Number of extensions: 390879
Number of successful extensions: 951
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)