Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30135
         (768 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  
SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)                  28   9.5  
SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   9.5  
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)                       28   9.5  

>SB_8580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 379 CLFYDECKTNEDSTTYIKCCQGQDGPITCKEK 474
           C   DECK N  +    + C   DG  TCK K
Sbjct: 202 CDDIDECKLNISTCPANRYCVNNDGSYTCKCK 233


>SB_8067| Best HMM Match : TSP_1 (HMM E-Value=1.1e-22)
          Length = 869

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = +1

Query: 370 SQHCLFYDECKTNEDSTTYIKC---CQG--QDGPITCKEKD 477
           SQ C  YD C     +T +  C   C G  Q   +TCK KD
Sbjct: 612 SQKCENYDNCPAEWVATEWSACSQTCAGGQQTRTVTCKRKD 652


>SB_2182| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 299

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 379 CLFYDECKTNEDSTTYIKCCQGQDGPITCKEK 474
           C   DECK N  +    + C   DG  TCK K
Sbjct: 153 CDDIDECKLNISTCPANRYCVNNDGSYTCKCK 184


>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1054

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = +1

Query: 379 CLFYDECKTNEDSTTYIKCCQGQDGPITCKEK 474
           C   DECK N  +    + C   DG  TCK K
Sbjct: 420 CDDIDECKLNISTCPANRYCVNNDGSYTCKCK 451


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,243,926
Number of Sequences: 59808
Number of extensions: 465129
Number of successful extensions: 1186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2083999566
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)