Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30135
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70306-2|CAA94323.2| 785|Caenorhabditis elegans Hypothetical pr... 30 1.6
AF000417-1|AAC39118.1| 785|Caenorhabditis elegans high-affinity... 30 1.6
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical... 29 3.6
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical... 29 3.6
Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical pr... 28 6.4
U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine r... 28 6.4
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 28 8.4
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 28 8.4
AF039719-8|AAO12411.1| 338|Caenorhabditis elegans Mutator prote... 28 8.4
AF039719-7|AAB96748.1| 441|Caenorhabditis elegans Mutator prote... 28 8.4
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 28 8.4
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 28 8.4
>Z70306-2|CAA94323.2| 785|Caenorhabditis elegans Hypothetical
protein C06G8.2 protein.
Length = 785
Score = 30.3 bits (65), Expect = 1.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 471 FLASYWTVLSLTTFYVCRGILISFTLI 391
++ +WT+ ++ FY C IL++F+ I
Sbjct: 95 YIGKFWTIFFISIFYACGQILLAFSSI 121
>AF000417-1|AAC39118.1| 785|Caenorhabditis elegans high-affinity
peptide transporter protein.
Length = 785
Score = 30.3 bits (65), Expect = 1.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -1
Query: 471 FLASYWTVLSLTTFYVCRGILISFTLI 391
++ +WT+ ++ FY C IL++F+ I
Sbjct: 95 YIGKFWTIFFISIFYACGQILLAFSSI 121
>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
protein C09E7.8b protein.
Length = 1080
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 555 YVKTADRALRPGESCDCFIERSD-ETAIFFLASYWTVLSLTTF 430
YVK + L+P E CFI + ET I L YW + F
Sbjct: 371 YVKILEVRLKPFEDTPCFITNTALETIIQELCEYWRMFENAPF 413
>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
protein C09E7.8a protein.
Length = 1114
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 555 YVKTADRALRPGESCDCFIERSD-ETAIFFLASYWTVLSLTTF 430
YVK + L+P E CFI + ET I L YW + F
Sbjct: 405 YVKILEVRLKPFEDTPCFITNTALETIIQELCEYWRMFENAPF 447
>Z81526-6|CAB04263.1| 2144|Caenorhabditis elegans Hypothetical protein
F33H2.5 protein.
Length = 2144
Score = 28.3 bits (60), Expect = 6.4
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 713 QVKARAIAMHNVNAMFENVLRDVDQWARYVRV 618
+V AR + H N+ F L D +WARY+RV
Sbjct: 1570 KVVARRVLQHYFNSFF--FLADYLEWARYLRV 1599
>U88167-6|AAB42223.1| 461|Caenorhabditis elegans Acetylcholine
receptor protein 11 protein.
Length = 461
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 80 P*PALHGKIHLRTLELYYFFSISIPSF*YKYMA 178
P P ++ +H+R LYY F++ IPS MA
Sbjct: 225 PYPTVNYYLHIRRRTLYYGFNLIIPSLLISLMA 257
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 62 DCTTQRP*PALHGKIHLRTLELYYFFSISIP 154
DC + P P +H +H+R LYY F++ +P
Sbjct: 210 DCCPE-PYPDVHFYLHMRRRTLYYGFNLIMP 239
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 62 DCTTQRP*PALHGKIHLRTLELYYFFSISIP 154
DC + P P +H +H+R LYY F++ +P
Sbjct: 210 DCCPE-PYPDVHFYLHMRRRTLYYGFNLIMP 239
>AF039719-8|AAO12411.1| 338|Caenorhabditis elegans Mutator protein
2, isoform b protein.
Length = 338
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 716 FQVKARAIAMHNVNAMFENVLRD 648
F+VKA A H N F+ VLRD
Sbjct: 16 FKVKANPKAFHKFNGKFQRVLRD 38
>AF039719-7|AAB96748.1| 441|Caenorhabditis elegans Mutator protein
2, isoform a protein.
Length = 441
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 716 FQVKARAIAMHNVNAMFENVLRD 648
F+VKA A H N F+ VLRD
Sbjct: 16 FKVKANPKAFHKFNGKFQRVLRD 38
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 62 DCTTQRP*PALHGKIHLRTLELYYFFSISIP 154
DC + P P +H +H+R LYY F++ +P
Sbjct: 210 DCCPE-PYPDVHFYLHMRRRTLYYGFNLIMP 239
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 62 DCTTQRP*PALHGKIHLRTLELYYFFSISIP 154
DC + P P +H +H+R LYY F++ +P
Sbjct: 210 DCCPE-PYPDVHFYLHMRRRTLYYGFNLIMP 239
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,050,773
Number of Sequences: 27780
Number of extensions: 347918
Number of successful extensions: 724
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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