Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30135
         (768 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03490.1 68418.m00305 UDP-glucoronosyl/UDP-glucosyl transfera...    29   2.6  
At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger) fa...    29   4.5  

>At5g03490.1 68418.m00305 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 465

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = -2

Query: 668 FENVLRDVDQWARYVRVCGSGSTVPQGASLGRVWRNTL 555
           F N    V+     VRVC  G TVP    LGRV   T+
Sbjct: 385 FVNARLLVEHLGVAVRVCEGGETVPDSDELGRVIAETM 422


>At5g43420.1 68418.m05309 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 zinc finger
           protein ATL4 [Arabidopsis thaliana] GI:4928399; contains
           Pfam profile PF00097: Zinc finger, C3HC4 type (RING
           finger)
          Length = 375

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 140 KRSNIVQVCASEFCREEQVKVSVLCNRLQH 51
           KRS    VC SEF  EE++++   C+ L H
Sbjct: 133 KRSQECSVCLSEFQDEEKLRIIPNCSHLFH 162


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,755,722
Number of Sequences: 28952
Number of extensions: 308647
Number of successful extensions: 657
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1721869952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)