Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30134
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0131 + 27898028-27898042,27898159-27898274,27898361-278984... 158 3e-39
01_06_0730 - 31552747-31553088,31553583-31553646,31553743-315538... 156 1e-38
01_06_0180 - 27260099-27260440,27261236-27261350,27261403-272615... 136 1e-32
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 32 0.37
03_01_0219 + 1731267-1731728,1732148-1732235,1732330-1732417,173... 29 3.5
01_06_0048 + 25951544-25952074 28 4.6
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 28 6.1
05_07_0028 + 27153663-27153932,27154966-27155175,27156220-271564... 28 6.1
02_04_0185 - 20748206-20748405,20749067-20749232,20749373-207494... 28 6.1
11_06_0007 - 19171122-19172036 27 8.0
11_01_0129 - 1073002-1073073,1073463-1073585,1073667-1073732,107... 27 8.0
>05_07_0131 +
27898028-27898042,27898159-27898274,27898361-27898424,
27899450-27899791
Length = 178
Score = 158 bits (384), Expect = 3e-39
Identities = 73/166 (43%), Positives = 103/166 (62%), Gaps = 3/166 (1%)
Frame = +3
Query: 3 IGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXX 182
+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++
Sbjct: 12 VGRALPTPGDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFERNP 71
Query: 183 XXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVI 362
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK +
Sbjct: 72 TTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATV 131
Query: 363 KAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRPSTY 491
C+R KQFHNS I+FPL R K TF RP+ +
Sbjct: 132 HFKLCKRDNTKQFHNSNIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0730 -
31552747-31553088,31553583-31553646,31553743-31553858,
31553964-31553978
Length = 178
Score = 156 bits (379), Expect = 1e-38
Identities = 73/166 (43%), Positives = 102/166 (61%), Gaps = 3/166 (1%)
Frame = +3
Query: 3 IGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXX 182
+GR LP+ + P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+I+
Sbjct: 12 VGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNP 71
Query: 183 XXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVI 362
N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R IQIIK +
Sbjct: 72 TTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATV 131
Query: 363 KAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRPSTY 491
C+R KQFH S I+FPL R K TF RP+ +
Sbjct: 132 HFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLF 177
>01_06_0180 -
27260099-27260440,27261236-27261350,27261403-27261518,
27261594-27261608
Length = 195
Score = 136 bits (329), Expect = 1e-32
Identities = 72/183 (39%), Positives = 103/183 (56%), Gaps = 20/183 (10%)
Frame = +3
Query: 3 IGRKLPSENEPKPPLYKMRIFSPDPIVAKSRF----------W-------YFLRQLKKFK 131
+GR LP+ + P +Y+M++++ + + AKS+F W YFLR+LKK K
Sbjct: 12 VGRALPTPGDEHPKIYRMKLWATNEVRAKSKFCSSYLVRFADWGACPVCRYFLRKLKKVK 71
Query: 132 KTTGEIVXXXXXXXXXXXXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGA 311
K+ G+++ N+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +
Sbjct: 72 KSNGQMLAINEIFERNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMAS 131
Query: 312 RHRARAHSIQIIKVEVIKAAACRRPQVKQFHNSTIRFPL---PKRVHHYKRLNTFAYKRP 482
RHR R IQIIK + C+R KQFHN +I+FPL R K TF RP
Sbjct: 132 RHRVRFPCIQIIKTATVHFKLCKRDNTKQFHNGSIKFPLVYRKVRPPTRKLKTTFKASRP 191
Query: 483 STY 491
+ +
Sbjct: 192 NLF 194
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 31.9 bits (69), Expect = 0.37
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = +2
Query: 335 NTDHQSGSNQGCC----VSPSTGQTVPQQHHQIPIAQTCAP 445
N H G N+G P+ QT P+QH Q+PI T P
Sbjct: 406 NNHHHQGGNRGGAHHVGTPPNQQQTKPEQHPQLPIGATKQP 446
>03_01_0219 +
1731267-1731728,1732148-1732235,1732330-1732417,
1732528-1732573,1732687-1732785,1734363-1734431,
1735706-1736036,1736123-1736256,1736400-1737251
Length = 722
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 320 SPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHH 415
S + L T ++G+N C STGQT P Q H
Sbjct: 561 SATKLATKCENGANVSCDGVGSTGQTPPLQQH 592
>01_06_0048 + 25951544-25952074
Length = 176
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3
Query: 109 RKYQKRDLATIGSGEKILILYKGGLGSFSDG 17
RKY D + G G L+ GG GS SDG
Sbjct: 24 RKYHSVDSSAAGRGTSNLVRLGGGSGSGSDG 54
>12_02_0133 - 14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 317 QSPSSLNTDHQSGSNQGCCVSPSTGQTVPQQHHQIPIAQTCAPLQET 457
Q P S T++Q SN + Q + HHQ+PI + + T
Sbjct: 950 QCPQSTETNYQRCSNGETESNQPVSQNELEDHHQVPITASSSTNNST 996
>05_07_0028 +
27153663-27153932,27154966-27155175,27156220-27156414,
27156491-27156840,27157198-27157423,27157524-27157692,
27158145-27158990,27159647-27159818,27159934-27160052,
27160117-27160155,27161033-27161157,27161250-27161309,
27161471-27161542,27161980-27162114
Length = 995
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -1
Query: 105 NTRNEIWRQLDPERKFSFYTREAWARSPTGA 13
N + WRQ+ F + E W RSPT +
Sbjct: 715 NNMLDTWRQVTKNTMFDEWLNEWWKRSPTSS 745
>02_04_0185 -
20748206-20748405,20749067-20749232,20749373-20749471,
20749487-20749561,20749663-20749743,20750121-20750274,
20750330-20750425,20750518-20750727,20750746-20750957
Length = 430
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 402 HNSTIRFPLPKRVHHYKRLNTFAY 473
H+ +R PLP +HH TFAY
Sbjct: 221 HDPEVRDPLPLTIHHLPIAVTFAY 244
>11_06_0007 - 19171122-19172036
Length = 304
Score = 27.5 bits (58), Expect = 8.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = -3
Query: 403 WNCLTCGRRHAAALITSTLMICI 335
W C CG R AA L+ +C+
Sbjct: 252 WGCKACGEREAAVLLLPCRHLCL 274
>11_01_0129 -
1073002-1073073,1073463-1073585,1073667-1073732,
1074227-1074347,1074536-1074603,1074792-1074863,
1076045-1076222,1077554-1077888
Length = 344
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = -2
Query: 209 PDTKILNLDGAFLWNFLNRDNFTSGLLELLKLSQEI 102
PD++I+ +DGAF D F +G +E+L+L++E+
Sbjct: 175 PDSRIVYIDGAF-------DLFHAGHVEILRLAREL 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,696,681
Number of Sequences: 37544
Number of extensions: 323885
Number of successful extensions: 961
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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