Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30134
         (573 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)         163   7e-41
At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW    162   1e-40
At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC) si...   160   5e-40
At2g35200.1 68415.m04317 expressed protein                             30   0.95 
At3g57460.1 68416.m06397 expressed protein weak similarity to SP...    29   2.2  

>At2g34480.1 68415.m04233 60S ribosomal protein L18A (RPL18aB)
          Length = 178

 Score =  163 bits (396), Expect = 7e-41
 Identities = 70/142 (49%), Positives = 98/142 (69%)
 Frame = +3

Query: 3   IGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXX 182
           +GR LP+E + +P +Y+M++++ + + AKS+FWYFLR+LKK KK+ G+++          
Sbjct: 12  VGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIYEKNP 71

Query: 183 XXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVI 362
               NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   +
Sbjct: 72  TTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATV 131

Query: 363 KAAACRRPQVKQFHNSTIRFPL 428
            A  C+R   KQFHNS I+FPL
Sbjct: 132 PAKLCKRESTKQFHNSKIKFPL 153


>At1g29965.1 68414.m03664 60S ribosomal protein L18A  (RPL18aA) JRW
          Length = 178

 Score =  162 bits (394), Expect = 1e-40
 Identities = 68/142 (47%), Positives = 99/142 (69%)
 Frame = +3

Query: 3   IGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXX 182
           +GR LP+E + +P +Y+M++++ + ++AKS+FWY+LR+ KK KK+ G+++          
Sbjct: 12  VGRALPTEKDEQPKIYRMKLWATNEVLAKSKFWYYLRRQKKVKKSNGQMLAINEIFEKNP 71

Query: 183 XXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVI 362
               NFGIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R   IQIIK   +
Sbjct: 72  TTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATV 131

Query: 363 KAAACRRPQVKQFHNSTIRFPL 428
            A+ C+R   KQFHNS I+FPL
Sbjct: 132 PASLCKRESTKQFHNSKIKFPL 153


>At3g14600.1 68416.m01849 60S ribosomal protein L18A (RPL18aC)
           similar to GB:CAA08791 from [Podocoryne carnea]
          Length = 178

 Score =  160 bits (389), Expect = 5e-40
 Identities = 68/142 (47%), Positives = 96/142 (67%)
 Frame = +3

Query: 3   IGRKLPSENEPKPPLYKMRIFSPDPIVAKSRFWYFLRQLKKFKKTTGEIVXXXXXXXXXX 182
           +GR LP+EN+  P +Y+M+++  + + AKS+FWYF+R+LKK KK+ G+++          
Sbjct: 12  VGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQMLAINEIFEKNP 71

Query: 183 XXXXNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIKVEVI 362
               N+GIWLRY+SR+G HNMY+EYRD ++ G V Q Y +M +RHR R   IQIIK   +
Sbjct: 72  TTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRFPCIQIIKTATV 131

Query: 363 KAAACRRPQVKQFHNSTIRFPL 428
            A  C+R   KQFHNS I+FPL
Sbjct: 132 PAKLCKREITKQFHNSKIKFPL 153


>At2g35200.1 68415.m04317 expressed protein
          Length = 201

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 60  IFSPDPIVAKSRFWYFLRQLKKFKKT 137
           +FSP P+ +K   WYF   +K F+++
Sbjct: 160 LFSPTPVTSKGNGWYFPSPIKVFRQS 185


>At3g57460.1 68416.m06397 expressed protein weak similarity to
           SP|O43847 Nardilysin precursor (EC 3.4.24.61)
           (N-arginine dibasic convertase) {Homo sapiens}
          Length = 356

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 390 VKQFHNSTIRFPLPKRVHHYK 452
           +KQ HN T+ +P+   +HHY+
Sbjct: 44  IKQGHNLTVSWPVTPSIHHYE 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,472,385
Number of Sequences: 28952
Number of extensions: 254627
Number of successful extensions: 688
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 687
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)