Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30133
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   276   3e-75
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.54 
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   1.3  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    27   2.2  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   2.9  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   2.9  
SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr ...    27   3.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   5.1  
SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces pombe...    26   6.7  
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   6.7  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  276 bits (676), Expect = 3e-75
 Identities = 127/191 (66%), Positives = 156/191 (81%)
 Frame = +3

Query: 57  MPLQMTKPAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSEKAD 236
           M LQ+ KPAP FK TAVVNG F++I L+DYKGK+V L FYPLDFTFVCPTEI+AFSE A 
Sbjct: 1   MSLQIGKPAPDFKGTAVVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSEAAS 60

Query: 237 EFRKIGCEVLGASTDSHFTHLAWINTPRKQGGLGPMNIPLISDKSHRISRDYGVLDEETG 416
           +F +   +V+  STDS ++HLA+INTPRK+GGLG +NIPL++D SH++SRDYGVL E+ G
Sbjct: 61  KFAERNAQVILTSTDSEYSHLAFINTPRKEGGLGGINIPLLADPSHKVSRDYGVLIEDAG 120

Query: 417 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 596
           + FRGLF+ID K  LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW  G+ TI
Sbjct: 121 VAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGSDTI 180

Query: 597 KPDTKAAQEYF 629
             DTK  ++YF
Sbjct: 181 --DTKNPEKYF 189


>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 198

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 527 LHQPQGLLHRPPHGQVVDRDL-PEVLLVVDDEESSEGNARLLVQ 399
           L Q Q L  +    ++ D DL PEV  ++ +EES  G +R L++
Sbjct: 115 LQQQQLLAEKDEENEIADNDLEPEVYDILYEEESKLGESRDLIR 158


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 453 QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 623
           +NL++I +  LPVG  +++   LR V     T K+G++      P  K+   + K   E
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +2

Query: 320 QAGRTRPHEHSSDKRQVAPHLPRLRSAGRGDGHSLPRTLHHRRQAEPQADHDQRP 484
           +A R+  H H +   +   H  R  S   G  HS   +LH   QA+P A   ++P
Sbjct: 448 KAVRSARHRHYASLDEQGLHSLRNLSKTSGMNHSADFSLHEFGQADPFAYEIEKP 502


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 8/86 (9%)
 Frame = +3

Query: 15  SVFVYYSKVFSFNKMPLQMTKPAPQFKATAVVNGE--------FKDISLSDYKGKYVVLF 170
           S F+Y     SF++     T  +P+   TA+            FK    + YK      F
Sbjct: 36  SSFIYLGNPISFHEYNYDETMVSPENVKTAIAGSAKDHETCRGFKKTGTTSYKD-----F 90

Query: 171 FYPLDFTFVCPTEIIAFSEKADEFRK 248
            +  D+T   PT  +  S+  DEF K
Sbjct: 91  VFSRDYTNWTPTFWVLLSQLIDEFLK 116


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 9/154 (5%)
 Frame = -2

Query: 523  TSRRVSSTDLPTGRSLIVICLRFCLSSMM---KSPRKGMPVSSSSTP*--SREMRCDLSL 359
            TS  V +T  P   S +V       SS +    +P     V ++STP   S  +     +
Sbjct: 1153 TSSTVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNTSTPITSSTVVNSSTPI 1212

Query: 358  IRGMFMGPSPPCLRG-VLIQARCVKCESV---EAPSTSQPILRNSSAFSENAMISVGHTN 191
                 +  S P     VL  +  +   S+     P TS  +L +S+  + + +++   T 
Sbjct: 1213 TSSTVLNTSTPITSSSVLNSSTPITSSSILNSSTPITSSSVLNSSTPITSSTVVN-SSTP 1271

Query: 190  VKSKG*KNSTTYFPL*SDREMSLNSPLTTAVALN 89
            + S    N  T  P+ S   ++ ++P+T++ ALN
Sbjct: 1272 ITSSTALN--TSIPITSSSVLNSSTPITSSTALN 1303


>SPBC16H5.13 |||WD repeat protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1026

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = +3

Query: 78  PAPQFKATAVVNGEFKDISLSDYKGKYVVLFFYPLDFTFVCPTE 209
           P P F+  +  +G+F   S +  K K V L  YP   TF   TE
Sbjct: 271 PEPHFELISKYSGDFPWKSCTILKSKPVSLCVYPEKITFNWLTE 314


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = -3

Query: 747 IISFFSIPDHFTFSEMC 697
           ++SFF++PD   +S++C
Sbjct: 222 VLSFFNVPDAIVYSKLC 238


>SPBC1773.02c |||thioredoxin peroxidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 195

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
 Frame = +3

Query: 60  PLQMTKPAPQ--FKATAVVNGEFKDISLSDYKG-----------KYVVLFFYPLDFTFVC 200
           P+ + KPA      +T  V     DI+L D  G           K +V+F YP   T  C
Sbjct: 30  PVMLKKPAKDESVDSTIQVGDVIPDITLPDEDGTSIRLRDITANKGLVIFAYPKASTPGC 89

Query: 201 PTEIIAFSEKADEFRKIGCEVLGASTDS 284
             +   F +   + +    EVLG S D+
Sbjct: 90  TKQGCGFRDNYPKIQASDYEVLGLSFDT 117


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 589 LAPGLQLAGHTSPCLSVNW 533
           L P  +L  HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,774
Number of Sequences: 5004
Number of extensions: 47503
Number of successful extensions: 140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)